C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: programmed cell death 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114209 PDCD10 9606 - 3:167683298-167734939 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392750 PDCD10-001 167683298-167734826 protein_coding
  ENST00000461494 PDCD10-012 167684242-167734544 protein_coding
  ENST00000462725 PDCD10-013 167687649-167734517 protein_coding
  ENST00000462830 PDCD10-019 167697007-167697955 processed_transcript
  ENST00000464360 PDCD10-010 167697040-167734832 protein_coding
  ENST00000470131 PDCD10-005 167684256-167734892 protein_coding
  ENST00000471885 PDCD10-008 167687222-167734851 protein_coding
  ENST00000473645 PDCD10-003 167683910-167734939 protein_coding
  ENST00000475915 PDCD10-014 167684339-167734510 protein_coding
  ENST00000479121 PDCD10-018 167687223-167720098 protein_coding
  ENST00000481136 PDCD10-004 167704558-167734929 retained_intron
  ENST00000483451 PDCD10-011 167695596-167734821 retained_intron
  ENST00000487678 PDCD10-015 167720205-167730976 processed_transcript
  ENST00000487947 PDCD10-017 167687215-167734482 protein_coding
  ENST00000492139 PDCD10-009 167687687-167734836 protein_coding
  ENST00000492396 PDCD10-016 167684114-167725477 protein_coding
  ENST00000494502 PDCD10-007 167695609-167734863 nonsense_mediated_decay
  ENST00000497056 PDCD10-002 167683912-167734930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392750ENST00000461494ENST00000462725ENST00000471885ENST00000473645ENST00000475915ENST00000479121ENST00000487947ENST00000492396ENST00000497056
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392750 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A 2.243±0.00 N/A N/A
ENST00000461494 N/A N/A N/A N/A N/A N/A N/A 7.643±0.00 N/A N/A N/A N/A 3.748±0.00 5.782±0.00
ENST00000462725 N/A N/A N/A N/A N/A 5.337±0.00 N/A N/A N/A N/A N/A 25.078±0.00 13.234±0.00 20.973±0.00
ENST00000471885 N/A N/A N/A N/A 4.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473645 N/A 2.820±0.00 1.288±0.00 N/A N/A 1.757±0.00 2.020±0.13 1.115±0.00 N/A 3.281±0.85 0.764±0.47 3.465±0.19 2.144±0.57 5.224±0.00
ENST00000475915 N/A N/A 1.598±0.00 N/A N/A 3.399±0.00 N/A N/A N/A N/A 0.915±0.00 N/A 5.925±0.00 11.953±0.00
ENST00000479121 13.222±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.314±0.62 N/A N/A N/A
ENST00000487947 N/A N/A 1.868±0.00 5.389±0.00 4.045±0.00 N/A N/A 3.968±0.00 3.854±0.00 N/A N/A N/A 1.625±0.00 N/A
ENST00000492396 N/A 6.872±0.00 N/A N/A N/A 2.985±0.00 5.200±0.00 7.429±0.00 2.095±0.00 N/A 1.460±0.00 N/A N/A 8.253±0.00
ENST00000497056 N/A 6.087±0.00 2.706±0.00 6.062±0.24 5.306±1.71 5.561±0.69 3.783±0.00 3.878±1.94 3.710±2.17 10.403±0.15 N/A 9.835±0.92 5.350±2.06 11.374±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049O CIL_00049O_0002 CGP 3:167683298-167825568

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0006915 IEA apoptotic process
GO:0008284 IDA positive regulation of cell proliferation
GO:0042803 IPI protein homodimerization activity
GO:0043066 IDA negative regulation of apoptotic process
GO:0043406 IDA positive regulation of MAP kinase activity
GO:0047485 IPI protein N-terminus binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012591 pdcd10b programmed cell death 10b protein_coding Danio_rerio
ENSDARG00000035054 pdcd10a programmed cell death 10a protein_coding Danio_rerio
ENSMUSG00000027835 Pdcd10 programmed cell death 10 protein_coding Mus_musculus

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