C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114270 COL7A1 9606 - 3:48564073-48595267 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328333 COL7A1-001 48564073-48595267 protein_coding
  ENST00000422991 COL7A1-003 48569758-48571626 protein_coding
  ENST00000459756 COL7A1-005 48567698-48570441 retained_intron
  ENST00000462475 COL7A1-010 48570894-48571330 retained_intron
  ENST00000465238 COL7A1-008 48564073-48565019 retained_intron
  ENST00000466591 COL7A1-009 48564074-48565339 retained_intron
  ENST00000467985 COL7A1-004 48568164-48570882 retained_intron
  ENST00000470076 COL7A1-007 48564073-48564992 processed_transcript
  ENST00000474432 COL7A1-006 48566540-48567363 retained_intron
  ENST00000487017 COL7A1-002 48564073-48584520 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328333ENST00000466591ENST00000487017
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328333 0.043±0.00 0.331±0.00 0.165±0.10 0.056±0.00 0.154±0.13 0.308±0.28 0.021±0.00 0.352±0.00 0.040±0.00 2.075±0.86 0.691±0.18 1.989±0.00
ENST00000466591 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A 0.501±0.00 N/A N/A N/A
ENST00000487017 0.047±0.00 0.213±0.00 0.273±0.00 0.258±0.00 0.176±0.00 1.032±0.00 0.083±0.00 0.570±0.00 0.295±0.00 3.214±1.52 0.944±0.15 2.150±1.51

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005590 TAS collagen type VII trimer
GO:0005604 IEA basement membrane
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0008544 TAS epidermis development
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 ISS extracellular matrix
GO:0035987 IEP endodermal cell differentiation
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021720 col7a1 collagen, type VII, alpha 1 protein_coding Danio_rerio
ENSMUSG00000025650 Col7a1 collagen, type VII, alpha 1 protein_coding Mus_musculus

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