C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328333 COL7A1-001 ENSG00000114270 9606 - 3:48564073-48595267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328333
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328333 0.043±0.00 0.331±0.00 0.165±0.10 0.056±0.00 0.154±0.13 0.308±0.28 0.021±0.00 0.352±0.00 0.040±0.00 2.075±0.86 0.691±0.18 1.989±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005590 TAS collagen type VII trimer
GO:0005604 IEA basement membrane
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0008544 TAS epidermis development
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 ISS extracellular matrix
GO:0035987 IEP endodermal cell differentiation
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112070 Col7a1-001 protein_coding Mus_musculus 0 8353
ENSMUST00000026740 Col7a1-201 protein_coding Mus_musculus 0 8347
ENSMUST00000126780 Col7a1-002 retained_intron Mus_musculus 0 1701

Loading