C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025650 Col7a1 10090 + 9:108953586-108984875 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026740 Col7a1-201 108953745-108984875 protein_coding
  ENSMUST00000112070 Col7a1-001 108953586-108984875 protein_coding
  ENSMUST00000126780 Col7a1-002 108969693-108980215 retained_intron
  ENSMUST00000127905 Col7a1-003 108967664-108968342 retained_intron
  ENSMUST00000138588 Col7a1-005 108982887-108983916 retained_intron
  ENSMUST00000149142 Col7a1-004 108975336-108977189 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026740ENSMUST00000112070ENSMUST00000126780ENSMUST00000138588ENSMUST00000149142
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026740 0.096±0.00 N/A 0.088±0.00 0.490±0.00 0.897±0.00 0.426±0.00 0.072±0.00 0.078±0.00 0.029±0.02 N/A 2.296±1.34 0.418±0.19 0.793±0.81 0.081±0.00
ENSMUST00000112070 5.928±4.14 0.491±0.19 0.179±0.00 0.691±0.14 2.139±0.41 0.217±0.09 N/A 0.113±0.06 0.023±0.00 1.617±0.19 N/A 1.116±0.50 0.093±0.04 0.560±0.10
ENSMUST00000126780 N/A N/A N/A 0.762±0.00 N/A N/A N/A N/A 0.038±0.01 N/A 4.166±1.03 N/A 0.881±1.12 N/A
ENSMUST00000138588 0.180±0.00 N/A N/A N/A 3.280±0.00 N/A N/A N/A 0.077±0.03 N/A N/A 5.541±0.86 N/A N/A
ENSMUST00000149142 N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005604 IDA basement membrane
GO:0005615 IEA extracellular space
GO:0007155 IEA cell adhesion
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0035987 IEA endodermal cell differentiation
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021720 col7a1 collagen, type VII, alpha 1 protein_coding Danio_rerio
ENSG00000114270 COL7A1 collagen, type VII, alpha 1 protein_coding Homo_sapiens

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