C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: uridine monophosphate synthetase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114491 UMPS 9606 + 3:124730366-124745193 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000232607 UMPS-001 124730366-124745193 protein_coding
  ENST00000460034 UMPS-006 124730452-124744757 nonsense_mediated_decay
  ENST00000462091 UMPS-002 124730433-124744757 nonsense_mediated_decay
  ENST00000467167 UMPS-008 124730445-124744757 nonsense_mediated_decay
  ENST00000474588 UMPS-004 124730452-124744757 nonsense_mediated_decay
  ENST00000479719 UMPS-009 124730452-124744757 nonsense_mediated_decay
  ENST00000487622 UMPS-013 124738131-124742665 retained_intron
  ENST00000495751 UMPS-012 124738625-124744070 processed_transcript
  ENST00000497791 UMPS-005 124730452-124744757 nonsense_mediated_decay
  ENST00000498715 UMPS-011 124737195-124738371 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000232607ENST00000460034ENST00000462091ENST00000467167ENST00000474588ENST00000479719ENST00000495751ENST00000497791ENST00000498715
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000232607 0.700±0.00 2.216±0.00 N/A 1.102±0.59 1.593±0.00 0.628±0.00 0.468±0.06 3.261±0.13 2.607±0.01 0.845±0.00 0.141±0.00 4.114±1.65 2.660±0.44 1.358±0.03
ENST00000460034 N/A N/A N/A 0.499±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462091 1.671±0.00 4.471±0.00 N/A 2.092±0.00 2.234±0.00 1.667±0.00 0.475±0.00 3.996±0.00 N/A 0.648±0.00 0.308±0.00 3.466±0.40 1.072±0.00 1.445±0.04
ENST00000467167 2.248±0.00 N/A N/A 0.684±0.00 2.823±0.00 N/A N/A N/A 1.779±0.00 0.236±0.00 0.229±0.00 16.990±0.00 7.612±6.75 3.674±2.22
ENST00000474588 N/A N/A 1.581±0.00 0.424±0.00 2.531±0.00 1.177±0.46 0.695±0.00 N/A N/A 1.291±0.62 0.834±0.00 N/A N/A 1.442±0.00
ENST00000479719 N/A 1.518±0.00 N/A 0.296±0.00 N/A 2.719±0.00 0.493±0.00 N/A N/A 0.940±0.00 0.735±0.00 N/A N/A N/A
ENST00000495751 N/A N/A N/A N/A N/A 2.291±0.00 1.068±0.00 5.593±0.00 N/A 1.702±0.00 0.916±0.00 15.970±0.00 9.302±1.96 5.269±0.08
ENST00000497791 N/A N/A N/A N/A N/A N/A 0.305±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000498715 N/A N/A 1.116±0.00 N/A 4.850±0.00 6.184±0.00 N/A 2.454±0.00 2.232±0.00 4.377±0.00 N/A 5.131±0.00 2.351±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HE CIL_0008HE_0001 VISTA 3:124285853-124889070

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004588 IDA:IEA orotate phosphoribosyltransferase activity
GO:0004590 IDA:IEA orotidine-5'-phosphate decarboxylase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006206 TAS pyrimidine nucleobase metabolic process
GO:0006207 IEA 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006221 IEA pyrimidine nucleotide biosynthetic process
GO:0006222 IDA UMP biosynthetic process
GO:0007565 IEA female pregnancy
GO:0007595 IEA lactation
GO:0008152 IEA metabolic process
GO:0009116 IEA nucleoside metabolic process
GO:0016740 IEA transferase activity
GO:0035690 IEA cellular response to drug
GO:0044205 IEA 'de novo' UMP biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046134 TAS pyrimidine nucleoside biosynthetic process
GO:0055086 TAS nucleobase-containing small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012215 umps uridine monophosphate synthetase protein_coding Danio_rerio
ENSMUSG00000022814 Umps uridine monophosphate synthetase protein_coding Mus_musculus

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