C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal sequence receptor, gamma (translocon-associated protein gamma)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114850 SSR3 9606 - 3:156540140-156555184 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265044 SSR3-001 156540140-156555184 protein_coding
  ENST00000463503 SSR3-005 156543141-156554845 protein_coding
  ENST00000464138 SSR3-009 156543062-156548997 processed_transcript
  ENST00000467733 SSR3-004 156543954-156555117 retained_intron
  ENST00000467789 SSR3-002 156542821-156555149 protein_coding
  ENST00000476217 SSR3-003 156543004-156555125 protein_coding
  ENST00000478842 SSR3-007 156543008-156551516 processed_transcript
  ENST00000496050 SSR3-006 156543182-156554125 protein_coding
  ENST00000498205 SSR3-008 156543004-156549099 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265044ENST00000463503ENST00000467789ENST00000476217
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265044 24.267±0.00 4.232±0.00 4.671±0.00 14.102±5.90 10.797±3.94 17.384±6.64 11.644±1.02 12.465±3.75 20.757±9.15 15.727±3.63 11.742±7.53 16.197±6.35 14.077±1.52 18.961±10.81
ENST00000463503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.803±0.00 N/A N/A
ENST00000467789 N/A N/A N/A 6.364±0.00 9.844±0.00 N/A 7.148±0.00 9.150±0.00 8.818±0.00 11.030±0.00 N/A N/A 16.944±2.50 N/A
ENST00000476217 N/A N/A N/A N/A 14.528±0.00 17.099±0.00 10.306±0.00 12.308±0.00 34.400±0.00 N/A N/A 8.520±0.00 12.584±0.00 11.480±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000667 CIL_000667_0003 CGP 3:156037701-156555184
CIL_000668 CIL_000668_0002 CGP 3:156540140-156706770

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005784 IEA Sec61 translocon complex
GO:0006412 TAS translation
GO:0006613 IEA cotranslational protein targeting to membrane
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0030176 IEA integral component of endoplasmic reticulum membrane
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014165 ssr3 signal sequence receptor, gamma protein_coding Danio_rerio
ENSDARG00000087263 ssr3 signal sequence receptor, gamma protein_coding Danio_rerio
ENSMUSG00000027828 Ssr3 signal sequence receptor, gamma protein_coding Mus_musculus

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