C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000667_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000008140-ENSDARG00000014165 CGP 7955 18:32590027-32809465
GeneTranscriptPositionBiotype
ENSDARG00000008140 (kcnab1)
potassium voltage-gated channel, shaker-related subfamily, beta member 1 		ENSDART00000059394 (kcnab1-201) 32738666-32795774 protein_coding
ENSDART00000131478 (kcnab1-001) 32590027-32795281 protein_coding
ENSDARG00000014165 (ssr3)
signal sequence receptor, gamma 		ENSDART00000021880 (ssr3-001) 32802233-32809465 protein_coding
ENSDART00000137101 (ssr3-002) 32802232-32809428 protein_coding
CIL_000667_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000090580-ENSDARG00000087263 CGP 7955 18:32836806-32897634
GeneTranscriptPositionBiotype
ENSDARG00000087263 (ssr3)
signal sequence receptor, gamma 		ENSDART00000122361 (ssr3-201) 32890662-32897634 protein_coding
ENSDARG00000090580 (kcnab1)
potassium voltage-gated channel, shaker-related subfamily, beta member 1 		ENSDART00000028269 (kcnab1-202) 32836806-32881848 protein_coding
CIL_000667_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169282-ENSG00000114850 CGP 9606 3:156037701-156555184
GeneTranscriptPositionBiotype
ENSG00000114850 (SSR3)
signal sequence receptor, gamma (translocon-associated protein gamma) 		ENST00000265044 (SSR3-001) 156540140-156555184 protein_coding
ENST00000463503 (SSR3-005) 156543141-156554845 protein_coding
ENST00000464138 (SSR3-009) 156543062-156548997 processed_transcript
ENST00000467733 (SSR3-004) 156543954-156555117 retained_intron
ENST00000467789 (SSR3-002) 156542821-156555149 protein_coding
ENST00000476217 (SSR3-003) 156543004-156555125 protein_coding
ENST00000478842 (SSR3-007) 156543008-156551516 processed_transcript
ENST00000496050 (SSR3-006) 156543182-156554125 protein_coding
ENST00000498205 (SSR3-008) 156543004-156549099 retained_intron
ENSG00000169282 (KCNAB1)
potassium voltage-gated channel, shaker-related subfamily, beta member 1 		ENST00000302490 (KCNAB1-001) 156291037-156538756 protein_coding
ENST00000389634 (KCNAB1-006) 156291908-156536747 protein_coding
ENST00000389636 (KCNAB1-003) 156120578-156537346 protein_coding
ENST00000461717 (KCNAB1-013) 156456924-156515147 processed_transcript
ENST00000471742 (KCNAB1-004) 156142962-156538604 protein_coding
ENST00000472028 (KCNAB1-009) 156037701-156514424 protein_coding
ENST00000475456 (KCNAB1-010) 156273553-156514408 protein_coding
ENST00000476362 (KCNAB1-012) 156455993-156514405 processed_transcript
ENST00000477912 (KCNAB1-007) 156037701-156474763 processed_transcript
ENST00000478609 (KCNAB1-008) 156037701-156453260 retained_intron
ENST00000489036 (KCNAB1-011) 156291920-156514391 nonsense_mediated_decay
ENST00000490337 (KCNAB1-002) 156120548-156538545 protein_coding
ENST00000496923 (KCNAB1-014) 156457478-156460547 processed_transcript
ENST00000497291 (KCNAB1-005) 156457210-156537241 processed_transcript
ENST00000618897 (KCNAB1-201) 156290987-156539138 protein_coding
ENSG00000227709 (RP11-118D22.3)
 ENST00000490318 (RP11-118D22.3-001) 156175852-156176911 processed_pseudogene
ENSG00000240596 (KCNAB1-AS2)
KCNAB1 antisense RNA 2 		ENST00000473876 (KCNAB1-AS2-001) 156215560-156227883 antisense
ENSG00000242017 (ALG1L15P)
asparagine-linked glycosylation 1-like 15, pseudogene 		ENST00000482834 (ALG1L15P-001) 156044155-156044948 processed_pseudogene
ENSG00000242537 (RP11-294L13.1)
 ENST00000464884 (RP11-294L13.1-001) 156111432-156114198 processed_pseudogene
ENSG00000272990 (RP11-305K5.1)
 ENST00000609190 (RP11-305K5.1-001) 156523740-156524247 antisense
CIL_000667_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027827-ENSMUSG00000027828 CGP 10090 3:65109384-65392623
GeneTranscriptPositionBiotype
ENSMUSG00000027827 (Kcnab1)
potassium voltage-gated channel, shaker-related subfamily, beta member 1 		ENSMUST00000049230 (Kcnab1-001) 65109384-65378219 protein_coding
ENSMUST00000159525 (Kcnab1-004) 65109384-65365788 protein_coding
ENSMUST00000160136 (Kcnab1-006) 65297414-65357085 protein_coding
ENSMUST00000161404 (Kcnab1-002) 65188103-65378223 protein_coding
ENSMUST00000161956 (Kcnab1-005) 65353767-65358820 processed_transcript
ENSMUST00000161979 (Kcnab1-003) 65253428-65377084 protein_coding
ENSMUSG00000027828 (Ssr3)
signal sequence receptor, gamma 		ENSMUST00000029414 (Ssr3-001) 65379655-65392623 protein_coding
ENSMUST00000119896 (Ssr3-002) 65382030-65392553 protein_coding
ENSMUST00000139785 (Ssr3-003) 65381680-65383381 retained_intron
ENSMUSG00000090120 (A730090N16Rik)
RIKEN cDNA A730090N16 gene 		ENSMUST00000160137 (A730090N16Rik-001) 65324776-65349429 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000667_0001ENSDARG00000008140ENSDART00000059394ENSDART00000131478ENSDARG00000014165ENSDART00000021880ENSDART00000137101CIL_000667_0002ENSDARG00000087263ENSDART00000122361ENSDARG00000090580ENSDART00000028269CIL_000667_0003ENSG00000114850ENST00000265044ENST00000463503ENST00000464138ENST00000467733ENST00000467789ENST00000476217ENST00000478842ENST00000496050ENST00000498205ENSG00000169282ENST00000302490ENST00000389634ENST00000389636ENST00000461717ENST00000471742ENST00000472028ENST00000475456ENST00000476362ENST00000477912ENST00000478609ENST00000489036ENST00000490337ENST00000496923ENST00000497291ENST00000618897ENSG00000227709ENST00000490318ENSG00000240596ENST00000473876ENSG00000242017ENST00000482834ENSG00000242537ENST00000464884ENSG00000272990ENST00000609190CIL_000667_0004ENSMUSG00000027827ENSMUST00000049230ENSMUST00000159525ENSMUST00000160136ENSMUST00000161404ENSMUST00000161956ENSMUST00000161979ENSMUSG00000027828ENSMUST00000029414ENSMUST00000119896ENSMUST00000139785ENSMUSG00000090120ENSMUST00000160137
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000667_0001ENSDARG00000008140ENSDART00000059394ENSDART00000131478ENSDARG00000014165ENSDART00000021880CIL_000667_0002ENSDARG00000087263ENSDART00000122361ENSDARG00000090580ENSDART00000028269CIL_000667_0003ENSG00000114850ENST00000265044ENST00000463503ENST00000467789ENST00000476217ENSG00000169282ENST00000302490ENST00000389634ENST00000461717ENST00000471742ENST00000475456ENST00000489036ENST00000490337ENST00000497291ENST00000618897ENSG00000227709ENST00000490318ENSG00000240596ENST00000473876ENSG00000242017ENST00000482834ENSG00000242537ENST00000464884ENSG00000272990ENST00000609190CIL_000667_0004ENSMUSG00000027827ENSMUST00000049230ENSMUST00000159525ENSMUST00000160136ENSMUST00000161404ENSMUST00000161956ENSMUST00000161979ENSMUSG00000027828ENSMUST00000029414ENSMUSG00000090120ENSMUST00000160137
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008140 ENSDART00000059394 N/A N/A N/A 1.702±0.00 N/A N/A 0.605±0.55 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000131478 N/A N/A N/A 4.237±0.00 N/A N/A 0.146±0.00 0.128±0.10 N/A N/A 0.300±0.00 N/A N/A N/A
ENSDARG00000014165 ENSDART00000021880 N/A N/A N/A 12.118±2.28 N/A N/A 33.838±20.09 244.525±134.53 16.072±0.00 N/A 6.891±0.00 N/A N/A N/A
ENSDART00000137101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000087263 ENSDART00000122361 N/A N/A N/A 6.244±4.09 N/A N/A 11.779±6.16 70.655±0.00 7.222±0.00 N/A 4.174±0.00 N/A N/A N/A
ENSDARG00000090580 ENSDART00000028269 N/A N/A N/A 0.226±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000114850 ENST00000265044 24.267±0.00 4.232±0.00 4.671±0.00 14.102±5.90 10.797±3.94 17.384±6.64 11.644±1.02 12.465±3.75 20.757±9.15 15.727±3.63 11.742±7.53 16.197±6.35 14.077±1.52 18.961±10.81
ENST00000463503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.803±0.00 N/A N/A
ENST00000464138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467789 N/A N/A N/A 6.364±0.00 9.844±0.00 N/A 7.148±0.00 9.150±0.00 8.818±0.00 11.030±0.00 N/A N/A 16.944±2.50 N/A
ENST00000476217 N/A N/A N/A N/A 14.528±0.00 17.099±0.00 10.306±0.00 12.308±0.00 34.400±0.00 N/A N/A 8.520±0.00 12.584±0.00 11.480±0.00
ENST00000478842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169282 ENST00000302490 N/A N/A N/A 4.286±1.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000389634 N/A N/A N/A N/A 1.072±0.00 N/A N/A N/A N/A N/A N/A 0.161±0.00 0.123±0.00 N/A
ENST00000389636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461717 N/A N/A N/A 10.763±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.217±0.00 N/A
ENST00000471742 4.911±0.00 3.221±0.00 N/A N/A 3.494±0.00 4.907±0.00 1.600±0.00 0.387±0.00 N/A 1.378±0.00 0.832±0.46 0.479±0.00 0.666±0.38 1.523±1.24
ENST00000472028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475456 N/A N/A N/A N/A N/A 3.608±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A
ENST00000490337 1.459±0.00 1.302±0.00 N/A 5.393±0.00 1.104±0.23 N/A N/A N/A N/A N/A N/A 0.309±0.00 N/A 1.974±0.00
ENST00000496923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497291 N/A N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.234±0.00
ENST00000618897 N/A N/A N/A 2.029±0.00 0.748±0.00 N/A 0.600±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000227709 ENST00000490318 0.107±0.00 N/A N/A N/A 0.014±0.00 N/A 0.119±0.08 N/A 0.293±0.00 0.013±0.00 N/A N/A N/A 0.036±0.02
ENSG00000240596 ENST00000473876 0.210±0.00 0.185±0.00 N/A N/A N/A N/A 0.180±0.09 0.277±0.00 N/A N/A N/A 0.098±0.00 N/A 0.113±0.00
ENSG00000242017 ENST00000482834 N/A 0.027±0.00 N/A 0.231±0.00 0.067±0.00 0.195±0.00 N/A 0.056±0.00 N/A N/A N/A 0.059±0.00 N/A 0.536±0.08
ENSG00000242537 ENST00000464884 N/A N/A N/A 0.005±0.00 0.044±0.00 N/A 0.009±0.00 N/A N/A N/A N/A 0.004±0.00 N/A 0.006±0.00
ENSG00000272990 ENST00000609190 N/A 6.553±0.00 2.525±0.00 11.714±0.00 11.278±0.00 7.213±0.00 2.486±0.00 4.933±1.39 1.826±0.00 N/A 2.471±0.00 3.167±2.33 N/A 4.675±3.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027827 ENSMUST00000049230 0.867±0.55 0.300±0.18 0.398±0.00 6.960±8.50 N/A 0.287±0.15 N/A 0.081±0.02 0.064±0.02 0.112±0.03 0.615±0.31 2.258±1.09 0.097±0.02 N/A
ENSMUST00000159525 N/A 0.268±0.10 N/A 8.271±0.00 N/A 0.151±0.00 N/A N/A 0.033±0.00 0.058±0.03 N/A 0.773±0.00 0.098±0.02 N/A
ENSMUST00000160136 0.529±0.00 0.881±0.00 N/A N/A 0.481±0.38 N/A 0.876±0.23 0.519±0.00 N/A N/A N/A 4.465±0.12 N/A N/A
ENSMUST00000161404 N/A N/A 0.328±0.00 N/A 0.245±0.12 N/A 0.392±0.02 0.158±0.07 0.092±0.06 0.254±0.10 0.440±0.00 0.735±0.00 0.207±0.14 0.726±0.00
ENSMUST00000161956 N/A 0.055±0.00 N/A N/A 0.046±0.03 0.061±0.04 N/A 0.024±0.00 0.037±0.02 0.060±0.01 N/A N/A 0.070±0.03 N/A
ENSMUST00000161979 0.276±0.00 N/A N/A N/A 0.194±0.13 N/A N/A 0.208±0.10 N/A 0.109±0.00 N/A 1.834±0.76 N/A 1.834±0.09
ENSMUSG00000027828 ENSMUST00000029414 68.569±11.25 77.800±6.85 75.786±6.02 36.414±18.22 62.899±5.03 56.481±7.10 41.011±2.59 54.870±4.23 75.914±7.98 66.705±0.96 47.975±1.84 123.543±36.15 79.885±42.38 10.393±4.08
ENSMUST00000119896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090120 ENSMUST00000160137 0.088±0.01 N/A 0.059±0.00 0.171±0.00 0.092±0.01 0.145±0.00 N/A N/A 0.096±0.04 N/A 0.107±0.04 0.352±0.13 0.524±0.30 1.476±0.00

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