C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal sequence receptor, gamma (translocon-associated protein gamma)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265044 SSR3-001 ENSG00000114850 9606 - 3:156540140-156555184 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265044
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265044 24.267±0.00 4.232±0.00 4.671±0.00 14.102±5.90 10.797±3.94 17.384±6.64 11.644±1.02 12.465±3.75 20.757±9.15 15.727±3.63 11.742±7.53 16.197±6.35 14.077±1.52 18.961±10.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000667 CIL_000667_0003 CGP 3:156037701-156555184
CIL_000668 CIL_000668_0002 CGP 3:156540140-156706770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005784 IEA Sec61 translocon complex
GO:0006412 TAS translation
GO:0006613 IEA cotranslational protein targeting to membrane
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0030176 IEA integral component of endoplasmic reticulum membrane
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029414 Ssr3-001 protein_coding Mus_musculus 0 1482
ENSMUST00000119896 Ssr3-002 protein_coding Mus_musculus 0 695
ENSMUST00000139785 Ssr3-003 retained_intron Mus_musculus 0 610

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