C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin tyrosine ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114999 TTL 9606 + 2:112482154-112541739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233336 TTL-001 112482154-112541739 protein_coding
  ENST00000460450 TTL-002 112522151-112532411 processed_transcript
  ENST00000476615 TTL-004 112501286-112520680 retained_intron
  ENST00000485537 TTL-003 112482199-112483930 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233336ENST00000460450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233336 N/A 0.475±0.00 N/A 0.824±0.50 0.470±0.00 0.249±0.16 0.248±0.13 0.256±0.20 0.187±0.03 0.335±0.00 0.305±0.19 0.335±0.10 0.193±0.04 0.281±0.13
ENST00000460450 7.251±0.00 3.960±0.00 1.890±0.00 9.079±0.72 4.693±0.69 2.877±1.02 5.656±2.71 3.332±2.53 3.116±0.51 4.516±0.70 5.385±2.50 7.008±3.35 4.676±1.36 3.606±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047U CIL_00047U_0001 CGP 2:112482154-112577150

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0004835 IEA tubulin-tyrosine ligase activity
GO:0005524 IEA ATP binding
GO:0006464 IEA cellular protein modification process
GO:0030516 IEA regulation of axon extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062418 ttl tubulin tyrosine ligase protein_coding Danio_rerio
ENSMUSG00000027394 Ttl tubulin tyrosine ligase protein_coding Mus_musculus

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