C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin tyrosine ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233336 TTL-001 ENSG00000114999 9606 + 2:112482154-112541739 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233336
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233336 0.475±0.00 0.824±0.50 0.470±0.00 0.249±0.16 0.248±0.13 0.256±0.20 0.187±0.03 0.335±0.00 0.305±0.19 0.335±0.10 0.193±0.04 0.281±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047U CIL_00047U_0001 CGP 2:112482154-112577150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0004835 IEA tubulin-tyrosine ligase activity
GO:0005524 IEA ATP binding
GO:0006464 IEA cellular protein modification process
GO:0030516 IEA regulation of axon extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035812 Ttl-001 protein_coding Mus_musculus 0 1423
ENSMUST00000144120 Ttl-002 protein_coding Mus_musculus 0 778
ENSDART00000142732 ttl-002 protein_coding Danio_rerio 0 340
ENSDART00000090273 ttl-001 protein_coding Danio_rerio 0 278
ENSMUST00000144730 Ttl-003 processed_transcript Mus_musculus 0 250
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00007 57

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