C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor IIIC, polypeptide 2, beta 110kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115207 GTF3C2 9606 - 2:27325849-27357034 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264720 GTF3C2-201 27325849-27357034 protein_coding
  ENST00000359541 GTF3C2-001 27325849-27356492 protein_coding
  ENST00000415683 GTF3C2-010 27327182-27329460 nonsense_mediated_decay
  ENST00000423998 GTF3C2-002 27343331-27356999 protein_coding
  ENST00000431028 GTF3C2-007 27326293-27328089 protein_coding
  ENST00000454704 GTF3C2-009 27326497-27335428 protein_coding
  ENST00000457098 GTF3C2-012 27325854-27328850 protein_coding
  ENST00000457748 GTF3C2-003 27342991-27356767 protein_coding
  ENST00000470115 GTF3C2-005 27335628-27337308 retained_intron
  ENST00000480989 GTF3C2-004 27336333-27338259 retained_intron
  ENST00000484680 GTF3C2-008 27328321-27328931 retained_intron
  ENST00000493511 GTF3C2-011 27335936-27336767 retained_intron
  ENST00000495298 GTF3C2-006 27326392-27328490 retained_intron
  ENST00000622534 GTF3C2-202 27333605-27343632 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000264720ENST00000359541ENST00000415683ENST00000454704ENST00000622534
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000264720 5.044±0.00 14.642±0.00 2.088±0.00 4.427±2.18 8.160±0.00 3.341±0.00 4.348±0.00 2.007±0.52 2.776±0.00 N/A 7.486±4.20 7.781±1.10 9.458±0.00
ENST00000359541 N/A N/A N/A N/A N/A N/A N/A 0.943±0.00 N/A N/A N/A N/A N/A
ENST00000415683 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.197±0.00 N/A N/A N/A
ENST00000454704 N/A N/A N/A N/A N/A N/A N/A 3.476±0.00 N/A N/A 27.936±0.00 20.872±0.00 N/A
ENST00000622534 N/A N/A N/A N/A N/A N/A 1.036±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DI CIL_0001DI_0001 CGP 2:27309492-27357034
CIL_0001DH CIL_0001DH_0001 CGP 2:27325849-27370486

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000127 IDA transcription factor TFIIIC complex
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 IDA transcription, DNA-templated
GO:0006383 IDA transcription from RNA polymerase III promoter
GO:0010467 TAS gene expression
GO:0042791 IC 5S class rRNA transcription from RNA polymerase III type 1 promoter
GO:0042797 IC tRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004574 gtf3c2 general transcription factor IIIC, polypeptide 2, beta protein_coding Danio_rerio
ENSMUSG00000029144 Gtf3c2 general transcription factor IIIC, polypeptide 2, beta protein_coding Mus_musculus
ENSMUSG00000101678 GTF3C2 predicted gene 29609 protein_coding Mus_musculus

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