C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor IIIC, polypeptide 2, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029144 Gtf3c2 10090 - 5:31156005-31180144 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043161 Gtf3c2-003 31156788-31180117 protein_coding
  ENSMUST00000088010 Gtf3c2-001 31156005-31180144 protein_coding
  ENSMUST00000126745 Gtf3c2-009 31157444-31159381 retained_intron
  ENSMUST00000133520 Gtf3c2-006 31167131-31179909 retained_intron
  ENSMUST00000135900 Gtf3c2-005 31172694-31179911 processed_transcript
  ENSMUST00000140793 Gtf3c2-010 31173391-31179911 protein_coding
  ENSMUST00000144469 Gtf3c2-008 31159495-31166132 processed_transcript
  ENSMUST00000151370 Gtf3c2-004 31156005-31180132 retained_intron
  ENSMUST00000153504 Gtf3c2-007 31173921-31174821 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043161ENSMUST00000088010ENSMUST00000126745ENSMUST00000135900ENSMUST00000151370
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043161 16.893±1.24 27.277±2.55 16.621±2.82 13.484±1.58 19.139±2.31 17.532±2.29 10.787±0.96 14.102±1.75 9.890±2.98 18.737±1.27 5.384±0.55 22.188±4.60 11.573±4.22 10.433±4.65
ENSMUST00000088010 6.801±0.00 N/A N/A 8.280±1.34 7.470±0.00 6.138±0.79 N/A 5.914±0.00 6.003±1.40 N/A 3.103±0.87 9.969±2.27 5.835±1.79 6.622±2.27
ENSMUST00000126745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.059±0.00
ENSMUST00000135900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.740±0.00
ENSMUST00000151370 N/A N/A 8.755±1.05 7.632±0.18 N/A 8.983±0.00 N/A N/A 4.867±1.07 N/A 2.389±0.34 7.444±0.00 4.368±0.78 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DI CIL_0001DI_0002 CGP 5:31140660-31179911
CIL_0001DH CIL_0001DH_0002 CGP 5:31156005-31193430

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004574 gtf3c2 general transcription factor IIIC, polypeptide 2, beta protein_coding Danio_rerio
ENSG00000115207 GTF3C2 general transcription factor IIIC, polypeptide 2, beta 110kDa protein_coding Homo_sapiens

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