C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIIC, polypeptide 2, beta 110kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264720 GTF3C2-201 ENSG00000115207 9606 - 2:27325849-27357034 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000264720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000264720 5.044±0.00 14.642±0.00 2.088±0.00 4.427±2.18 8.160±0.00 3.341±0.00 4.348±0.00 2.007±0.52 2.776±0.00 7.486±4.20 7.781±1.10 9.458±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DI CIL_0001DI_0001 CGP 2:27309492-27357034
CIL_0001DH CIL_0001DH_0001 CGP 2:27325849-27370486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000127 IDA transcription factor TFIIIC complex
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 IDA transcription, DNA-templated
GO:0006383 IDA transcription from RNA polymerase III promoter
GO:0010467 TAS gene expression
GO:0042791 IC 5S class rRNA transcription from RNA polymerase III type 1 promoter
GO:0042797 IC tRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088010 Gtf3c2-001 protein_coding Mus_musculus 0 3908
ENSMUST00000101411 GTF3C2-001 protein_coding Mus_musculus 0 3075
ENSMUST00000043161 Gtf3c2-003 protein_coding Mus_musculus 0 3014
ENSMUST00000151370 Gtf3c2-004 retained_intron Mus_musculus 0 2713
ENSMUST00000133520 Gtf3c2-006 retained_intron Mus_musculus 0 1677
ENSMUST00000135900 Gtf3c2-005 processed_transcript Mus_musculus 0 998
ENSMUST00000126745 Gtf3c2-009 retained_intron Mus_musculus 0 765
ENSMUST00000140793 Gtf3c2-010 protein_coding Mus_musculus 0 750
ENSMUST00000144469 Gtf3c2-008 processed_transcript Mus_musculus 0 628
ENSMUST00000153504 Gtf3c2-007 protein_coding Mus_musculus 0 514

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