C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fanconi anemia, complementation group L
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115392 FANCL 9606 - 2:58159243-58241372 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233741 FANCL-001 58159247-58241350 protein_coding
  ENST00000402135 FANCL-002 58159247-58241350 protein_coding
  ENST00000403295 FANCL-004 58159243-58241323 protein_coding
  ENST00000403676 FANCL-006 58159755-58241302 protein_coding
  ENST00000417361 FANCL-005 58163436-58241348 protein_coding
  ENST00000427708 FANCL-009 58163029-58241311 protein_coding
  ENST00000446381 FANCL-007 58161623-58241325 protein_coding
  ENST00000449070 FANCL-003 58160118-58241372 protein_coding
  ENST00000470506 FANCL-010 58162865-58165803 retained_intron
  ENST00000481670 FANCL-008 58213505-58241259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233741ENST00000402135ENST00000403295ENST00000427708ENST00000470506ENST00000481670
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233741 1.323±0.00 2.024±0.00 N/A 6.458±1.08 4.067±0.00 2.948±0.70 1.423±0.00 N/A 2.366±0.00 1.465±0.00 N/A 8.057±4.62 3.450±0.93 9.110±1.62
ENST00000402135 N/A N/A N/A N/A N/A N/A N/A 3.577±0.00 N/A N/A N/A 2.117±0.00 N/A N/A
ENST00000403295 N/A N/A N/A N/A 4.314±0.00 N/A N/A N/A N/A 5.409±0.00 2.461±0.00 N/A N/A N/A
ENST00000427708 N/A N/A 5.766±0.00 8.494±0.00 N/A N/A N/A N/A 9.593±0.00 N/A N/A 12.048±0.00 N/A N/A
ENST00000470506 N/A N/A N/A N/A N/A N/A N/A N/A 2.127±0.00 N/A N/A N/A N/A N/A
ENST00000481670 N/A N/A 8.745±0.00 N/A 20.227±0.00 17.905±0.00 12.420±0.00 10.693±0.00 34.713±0.00 27.295±0.00 N/A 20.774±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZI CIL_0007ZI_0001 VISTA 2:57618972-58220354
CIL_0007LM CIL_0007LM_0001 UCNEbase 2:57740887-60568309
CIL_0007WS CIL_0007WS_0001 VISTA 2:57829929-58432668

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005635 IEA nuclear envelope
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 IMP DNA repair
GO:0006513 IDA protein monoubiquitination
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007276 IEA gamete generation
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031625 IPI ubiquitin protein ligase binding
GO:0042127 IEA regulation of cell proliferation
GO:0043240 IDA Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007885 fancl Fanconi anemia, complementation group L protein_coding Danio_rerio
ENSMUSG00000004018 Fancl Fanconi anemia, complementation group L protein_coding Mus_musculus

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