C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007WS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm57 VISTA 9606 2:57829929-58432668
GeneTranscriptPositionBiotype
ENSG00000028116 (VRK2)
vaccinia related kinase 2 		ENST00000340157 (VRK2-001) 58046691-58159871 protein_coding
ENST00000412104 (VRK2-201) 58046642-58159920 protein_coding
ENST00000417641 (VRK2-004) 57907651-58159871 protein_coding
ENST00000428021 (VRK2-003) 58046875-58084927 protein_coding
ENST00000432057 (VRK2-002) 58046712-58159784 nonsense_mediated_decay
ENST00000435505 (VRK2-005) 57907651-58159867 protein_coding
ENST00000440705 (VRK2-008) 58046715-58159784 protein_coding
ENST00000463222 (VRK2-007) 57907656-58033327 processed_transcript
ENST00000478687 (VRK2-006) 57907652-58033663 processed_transcript
ENSG00000115392 (FANCL)
Fanconi anemia, complementation group L 		ENST00000233741 (FANCL-001) 58159247-58241350 protein_coding
ENST00000402135 (FANCL-002) 58159247-58241350 protein_coding
ENST00000403295 (FANCL-004) 58159243-58241323 protein_coding
ENST00000403676 (FANCL-006) 58159755-58241302 protein_coding
ENST00000417361 (FANCL-005) 58163436-58241348 protein_coding
ENST00000427708 (FANCL-009) 58163029-58241311 protein_coding
ENST00000446381 (FANCL-007) 58161623-58241325 protein_coding
ENST00000449070 (FANCL-003) 58160118-58241372 protein_coding
ENST00000470506 (FANCL-010) 58162865-58165803 retained_intron
ENST00000481670 (FANCL-008) 58213505-58241259 protein_coding
ENSG00000225226 (AC007250.4)
 ENST00000454367 (AC007250.4-001) 58275877-58296548 lincRNA
ENSG00000233426 (EIF3FP3)
eukaryotic translation initiation factor 3, subunit F pseudogene 3 		ENST00000434851 (EIF3FP3-001) 58251440-58252525 processed_pseudogene
ENSG00000251738 (AC073215.1)
 ENST00000515929 (AC073215.1-201) 58062581-58062665 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007WS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm57 VISTA 10090 11:26189088-26791733
GeneTranscriptPositionBiotype
ENSMUSG00000004018 (Fancl)
Fanconi anemia, complementation group L 		ENSMUST00000004120 (Fancl-001) 26386135-26471876 protein_coding
ENSMUST00000109509 (Fancl-003) 26387202-26471421 protein_coding
ENSMUST00000134445 (Fancl-005) 26468335-26471430 protein_coding
ENSMUST00000136830 (Fancl-004) 26387202-26422460 protein_coding
ENSMUST00000143471 (Fancl-002) 26387202-26469124 processed_transcript
ENSMUSG00000032985 (5730522E02Rik)
RIKEN cDNA 5730522E02 gene 		ENSMUST00000109511 (5730522E02Rik-001) 25619087-26210572 protein_coding
ENSMUST00000125773 (5730522E02Rik-004) 25617668-26210569 processed_transcript
ENSMUST00000125987 (5730522E02Rik-006) 26103185-26210763 processed_transcript
ENSMUST00000135168 (5730522E02Rik-003) 25849297-26081600 processed_transcript
ENSMUST00000144503 (5730522E02Rik-007) 25602816-25620098 processed_transcript
ENSMUST00000144841 (5730522E02Rik-005) 25635312-25652068 processed_transcript
ENSMUST00000153834 (5730522E02Rik-002) 25602763-25648147 processed_transcript
ENSMUST00000179180 (5730522E02Rik-201) 25647915-25769141 protein_coding
ENSMUSG00000064090 (Vrk2)
vaccinia related kinase 2 		ENSMUST00000078362 (Vrk2-201) 26471404-26593920 protein_coding
ENSMUST00000109504 (Vrk2-001) 26471322-26591729 protein_coding
ENSMUST00000124294 (Vrk2-003) 26533841-26593622 retained_intron
ENSMUST00000125545 (Vrk2-005) 26583296-26593603 processed_transcript
ENSMUST00000133487 (Vrk2-006) 26534257-26549365 processed_transcript
ENSMUST00000155728 (Vrk2-002) 26545395-26593923 retained_intron
ENSMUST00000156264 (Vrk2-004) 26547848-26593999 protein_coding
ENSMUSG00000068314 (Gm6899)
predicted gene 6899 		ENSMUST00000089614 (Gm6899-201) 26593241-26593862 protein_coding
ENSMUSG00000069939 (Gm12070)
predicted gene 12070 		ENSMUST00000119551 (Gm12070-001) 26786633-26787634 processed_pseudogene
ENSMUSG00000081811 (Gm12713)
predicted gene 12713 		ENSMUST00000118404 (Gm12713-001) 26409207-26410501 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007WS_0001ENSG00000028116ENST00000340157ENST00000412104ENST00000417641ENST00000428021ENST00000432057ENST00000435505ENST00000440705ENST00000463222ENST00000478687ENSG00000115392ENST00000233741ENST00000402135ENST00000403295ENST00000403676ENST00000417361ENST00000427708ENST00000446381ENST00000449070ENST00000470506ENST00000481670ENSG00000225226ENST00000454367ENSG00000233426ENST00000434851ENSG00000251738ENST00000515929CIL_0007WS_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007WS_0001ENSG00000028116ENST00000340157ENST00000417641ENST00000432057ENST00000440705ENSG00000115392ENST00000233741ENST00000402135ENST00000403295ENST00000427708ENST00000470506ENST00000481670ENSG00000225226ENST00000454367ENSG00000233426ENST00000434851ENSG00000251738ENST00000515929CIL_0007WS_0002ENSMUSG00000004018ENSMUST00000004120ENSMUST00000109509ENSMUST00000134445ENSMUST00000136830ENSMUST00000143471ENSMUSG00000032985ENSMUST00000109511ENSMUST00000125773ENSMUST00000125987ENSMUST00000135168ENSMUST00000144841ENSMUST00000153834ENSMUST00000179180ENSMUSG00000064090ENSMUST00000078362ENSMUST00000109504ENSMUST00000155728ENSMUST00000156264ENSMUSG00000068314ENSMUST00000089614ENSMUSG00000069939ENSMUST00000119551ENSMUSG00000081811ENSMUST00000118404
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000028116 ENST00000340157 2.917±0.00 N/A N/A N/A 3.562±0.00 2.028±0.00 3.403±2.42 2.508±0.00 2.809±0.00 N/A 1.861±0.00 7.673±0.00 2.246±0.06 4.781±0.00
ENST00000412104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417641 N/A N/A N/A 1.936±0.00 N/A N/A 0.666±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000428021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.128±0.00
ENST00000435505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440705 N/A N/A N/A N/A 2.706±0.00 2.269±0.00 N/A 1.515±0.00 N/A 1.135±0.00 1.388±0.00 14.005±0.00 2.998±2.03 5.048±0.00
ENST00000463222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000115392 ENST00000233741 1.323±0.00 2.024±0.00 N/A 6.458±1.08 4.067±0.00 2.948±0.70 1.423±0.00 N/A 2.366±0.00 1.465±0.00 N/A 8.057±4.62 3.450±0.93 9.110±1.62
ENST00000402135 N/A N/A N/A N/A N/A N/A N/A 3.577±0.00 N/A N/A N/A 2.117±0.00 N/A N/A
ENST00000403295 N/A N/A N/A N/A 4.314±0.00 N/A N/A N/A N/A 5.409±0.00 2.461±0.00 N/A N/A N/A
ENST00000403676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427708 N/A N/A 5.766±0.00 8.494±0.00 N/A N/A N/A N/A 9.593±0.00 N/A N/A 12.048±0.00 N/A N/A
ENST00000446381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470506 N/A N/A N/A N/A N/A N/A N/A N/A 2.127±0.00 N/A N/A N/A N/A N/A
ENST00000481670 N/A N/A 8.745±0.00 N/A 20.227±0.00 17.905±0.00 12.420±0.00 10.693±0.00 34.713±0.00 27.295±0.00 N/A 20.774±0.00 N/A N/A
ENSG00000225226 ENST00000454367 N/A 0.290±0.00 0.110±0.00 0.124±0.00 0.118±0.00 0.058±0.02 0.107±0.00 0.096±0.00 0.275±0.16 0.086±0.03 N/A 0.178±0.09 0.227±0.11 0.729±0.25
ENSG00000233426 ENST00000434851 0.018±0.00 0.057±0.00 0.066±0.00 0.449±0.41 0.099±0.06 0.545±0.51 0.122±0.10 0.426±0.41 0.017±0.00 N/A 0.358±0.29 3.669±4.66 2.368±2.06 N/A
ENSG00000251738 ENST00000515929 N/A 0.619±0.00 N/A N/A 0.926±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004018 ENSMUST00000004120 N/A N/A 1.220±0.08 0.554±0.39 0.475±0.00 N/A N/A N/A 1.938±0.76 N/A 0.294±0.10 0.657±0.24 0.907±0.00 N/A
ENSMUST00000109509 2.250±0.80 1.553±0.26 3.568±0.15 2.873±1.20 1.263±0.29 1.467±0.20 1.174±0.42 1.688±0.21 4.519±3.57 1.853±0.21 1.017±0.10 2.975±1.60 4.306±1.64 5.300±1.79
ENSMUST00000134445 N/A N/A N/A 2.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.717±0.00 N/A
ENSMUST00000136830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.274±0.00 N/A N/A
ENSMUST00000143471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.574±0.00 N/A N/A
ENSMUSG00000032985 ENSMUST00000109511 N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.029±0.00 N/A N/A
ENSMUST00000125773 0.118±0.00 0.172±0.02 N/A 2.381±1.75 0.121±0.07 N/A N/A 0.087±0.03 0.174±0.08 0.096±0.00 N/A 0.398±0.13 0.055±0.00 0.086±0.03
ENSMUST00000125987 0.448±0.11 0.429±0.18 N/A N/A 0.376±0.08 0.380±0.30 0.083±0.00 0.497±0.00 0.478±0.02 0.202±0.10 N/A 0.313±0.13 0.095±0.08 0.140±0.05
ENSMUST00000135168 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144841 0.022±0.00 N/A N/A N/A N/A N/A 0.012±0.00 0.033±0.01 0.038±0.00 N/A N/A 0.012±0.01 0.006±0.00 0.016±0.00
ENSMUST00000153834 0.106±0.01 N/A N/A N/A N/A N/A N/A 0.381±0.00 N/A N/A N/A 0.110±0.00 0.115±0.00 N/A
ENSMUST00000179180 N/A N/A N/A N/A 0.168±0.00 N/A 0.111±0.00 N/A 0.126±0.00 N/A N/A 0.333±0.30 N/A 0.219±0.00
ENSMUSG00000064090 ENSMUST00000078362 1.449±0.47 N/A 2.941±0.08 N/A 1.176±0.44 N/A 1.086±0.26 1.181±0.39 3.132±2.64 0.823±0.08 0.906±0.54 1.423±1.27 2.971±0.31 2.911±0.86
ENSMUST00000109504 1.053±0.00 N/A 3.095±0.47 1.100±0.48 2.198±0.00 1.338±0.18 N/A 0.971±0.38 3.202±2.69 1.234±0.36 1.337±0.52 2.394±2.30 3.912±1.64 3.284±0.92
ENSMUST00000124294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155728 N/A N/A N/A N/A 0.401±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.257±0.00
ENSMUSG00000068314 ENSMUST00000089614 N/A 3.058±0.73 N/A N/A 2.391±0.70 N/A N/A N/A N/A 1.390±0.00 N/A 2.063±0.85 N/A N/A
ENSMUSG00000069939 ENSMUST00000119551 0.141±0.05 0.096±0.03 16.135±16.05 51.135±10.75 0.102±0.01 0.067±0.03 0.150±0.05 0.090±0.04 16.466±28.36 0.062±0.03 0.120±0.09 0.127±0.06 0.144±0.01 0.060±0.00
ENSMUSG00000081811 ENSMUST00000118404 0.056±0.00 0.135±0.00 0.055±0.00 0.105±0.04 0.121±0.00 0.128±0.00 N/A N/A 0.069±0.03 0.129±0.07 N/A 0.186±0.10 0.035±0.02 0.093±0.00

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