C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group L
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233741 FANCL-001 ENSG00000115392 9606 - 2:58159247-58241350 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000233741
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000233741 1.323±0.00 2.024±0.00 6.458±1.08 4.067±0.00 2.948±0.70 1.423±0.00 2.366±0.00 1.465±0.00 8.057±4.62 3.450±0.93 9.110±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZI CIL_0007ZI_0001 VISTA 2:57618972-58220354
CIL_0007LM CIL_0007LM_0001 UCNEbase 2:57740887-60568309
CIL_0007WS CIL_0007WS_0001 VISTA 2:57829929-58432668

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 IMP DNA repair
GO:0006513 IDA protein monoubiquitination
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0031625 IPI ubiquitin protein ligase binding
GO:0043240 IDA Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004120 Fancl-001 protein_coding Mus_musculus 0 1109
ENSMUST00000109509 Fancl-003 protein_coding Mus_musculus 0 974
ENSMUST00000134445 Fancl-005 protein_coding Mus_musculus 0 350
ENSMUST00000143471 Fancl-002 processed_transcript Mus_musculus 8e-26 122

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