C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fanconi anemia, complementation group L
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004018 Fancl 10090 + 11:26386135-26471876 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004120 Fancl-001 26386135-26471876 protein_coding
  ENSMUST00000109509 Fancl-003 26387202-26471421 protein_coding
  ENSMUST00000134445 Fancl-005 26468335-26471430 protein_coding
  ENSMUST00000136830 Fancl-004 26387202-26422460 protein_coding
  ENSMUST00000143471 Fancl-002 26387202-26469124 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004120ENSMUST00000109509ENSMUST00000134445ENSMUST00000136830ENSMUST00000143471
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004120 N/A N/A 1.220±0.08 0.554±0.39 0.475±0.00 N/A N/A N/A 1.938±0.76 N/A 0.294±0.10 0.657±0.24 0.907±0.00 N/A
ENSMUST00000109509 2.250±0.80 1.553±0.26 3.568±0.15 2.873±1.20 1.263±0.29 1.467±0.20 1.174±0.42 1.688±0.21 4.519±3.57 1.853±0.21 1.017±0.10 2.975±1.60 4.306±1.64 5.300±1.79
ENSMUST00000134445 N/A N/A N/A 2.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.717±0.00 N/A
ENSMUST00000136830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.274±0.00 N/A N/A
ENSMUST00000143471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.574±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LM CIL_0007LM_0002 UCNEbase 11:24062983-26981636
CIL_0007Z0 CIL_0007Z0_0002 VISTA 11:25799721-26400689
CIL_0009DC CIL_0009DC_0002 VISTA 11:25820371-26422138
CIL_0009CV CIL_0009CV_0002 VISTA 11:25863483-26464974
CIL_0007WS CIL_0007WS_0002 VISTA 11:26189088-26791733
CIL_0004OQ CIL_0004OQ_0002 CGP 11:26386135-26593999

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005635 IPI nuclear envelope
GO:0005737 IEA cytoplasm
GO:0006281 ISS DNA repair
GO:0006513 ISS protein monoubiquitination
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007276 IMP gamete generation
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0031625 IEA ubiquitin protein ligase binding
GO:0042127 IMP regulation of cell proliferation
GO:0043240 ISS Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007885 fancl Fanconi anemia, complementation group L protein_coding Danio_rerio
ENSG00000115392 FANCL Fanconi anemia, complementation group L protein_coding Homo_sapiens

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