C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET and MYND domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115593 SMYD1 9606 + 2:88067780-88113387 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000419482 SMYD1-001 88067780-88113387 protein_coding
  ENST00000438570 SMYD1-003 88067862-88112484 protein_coding
  ENST00000444564 SMYD1-002 88067825-88110854 protein_coding
  ENST00000468008 SMYD1-004 88083053-88091025 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000419482ENST00000438570ENST00000444564ENST00000468008
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000419482 0.016±0.00 0.013±0.00 0.351±0.00 1.019±0.00 1.468±0.00 58.111±40.95 N/A 0.058±0.05 N/A 17.944±3.56 0.014±0.00
ENST00000438570 N/A N/A N/A N/A N/A N/A N/A N/A 0.420±0.00 N/A N/A
ENST00000444564 N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A 0.073±0.00 N/A 0.031±0.00
ENST00000468008 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I0 CIL_0004I0_0002 CGP 2:88067780-88128116

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003714 IEA transcription corepressor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IEA heart development
GO:0010831 IDA positive regulation of myotube differentiation
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0035914 IEA skeletal muscle cell differentiation
GO:0045663 IDA positive regulation of myoblast differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009280 smyd1a SET and MYND domain containing 1a protein_coding Danio_rerio
ENSDARG00000058549 smyd1b SET and MYND domain containing 1b protein_coding Danio_rerio
ENSDARG00000091253 CU469500.4 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000055027 Smyd1 SET and MYND domain containing 1 protein_coding Mus_musculus

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