C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419482 SMYD1-001 ENSG00000115593 9606 + 2:88067780-88113387 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverMuscleOvaryENST00000419482
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Muscle Ovary
ENST00000419482 0.016±0.00 0.013±0.00 0.351±0.00 1.019±0.00 1.468±0.00 58.111±40.95 0.058±0.05 17.944±3.56 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I0 CIL_0004I0_0002 CGP 2:88067780-88128116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003714 IEA transcription corepressor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IEA heart development
GO:0010831 IDA positive regulation of myotube differentiation
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0035914 IEA skeletal muscle cell differentiation
GO:0045663 IDA positive regulation of myoblast differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074301 Smyd1-001 protein_coding Mus_musculus 0 1936
ENSMUST00000114188 Smyd1-005 protein_coding Mus_musculus 0 1720
ENSMUST00000114186 Smyd1-002 protein_coding Mus_musculus 0 961
ENSMUST00000173730 Smyd1-008 protein_coding Mus_musculus 0 224

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