C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET and MYND domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055027 Smyd1 10090 - 6:71213940-71322233 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074301 Smyd1-001 71213940-71262281 protein_coding
  ENSMUST00000114186 Smyd1-002 71213942-71262253 protein_coding
  ENSMUST00000114188 Smyd1-005 71215342-71322233 protein_coding
  ENSMUST00000129630 Smyd1-004 71259605-71262232 protein_coding
  ENSMUST00000173297 Smyd1-007 71312054-71322206 protein_coding
  ENSMUST00000173730 Smyd1-008 71215500-71216874 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074301ENSMUST00000114186ENSMUST00000114188ENSMUST00000173297ENSMUST00000173730
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074301 0.471±0.07 0.086±0.00 0.061±0.03 0.220±0.08 9.985±5.96 N/A 66.038±4.99 0.379±0.32 0.253±0.23 2.034±0.74 74.499±7.01 0.161±0.00 0.084±0.01 0.325±0.00
ENSMUST00000114186 0.332±0.13 0.082±0.02 0.079±0.00 0.116±0.05 6.714±3.78 0.070±0.04 39.226±5.33 0.498±0.26 0.247±0.31 0.980±0.66 81.020±5.75 0.157±0.08 0.102±0.02 2.029±0.95
ENSMUST00000114188 0.163±0.00 0.059±0.02 N/A N/A 0.060±0.00 0.094±0.04 N/A N/A 0.220±0.02 N/A N/A 0.209±0.13 N/A N/A
ENSMUST00000173297 N/A N/A N/A N/A 0.243±0.15 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173730 N/A N/A N/A N/A N/A N/A N/A 0.387±0.00 N/A N/A N/A 0.106±0.00 0.334±0.07 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q7 CIL_0004Q7_0002 CGP 6:71199827-71322233

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IPI chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0010831 IEA positive regulation of myotube differentiation
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045663 IEA positive regulation of myoblast differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009280 smyd1a SET and MYND domain containing 1a protein_coding Danio_rerio
ENSDARG00000058549 smyd1b SET and MYND domain containing 1b protein_coding Danio_rerio
ENSDARG00000091253 CU469500.4 Uncharacterized protein protein_coding Danio_rerio
ENSG00000115593 SMYD1 SET and MYND domain containing 1 protein_coding Homo_sapiens

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