C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263663 TAF1B-001 ENSG00000115750 9606 + 2:9843354-9934416 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263663
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263663 1.715±0.00 1.292±0.00 0.340±0.00 1.186±0.00 2.154±0.75 1.573±0.71 0.397±0.21 3.885±0.00 0.706±0.00 1.929±0.27 1.207±0.00 1.357±0.67 1.750±0.55 3.114±2.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MN CIL_0001MN_0001 CGP 2:9843354-10002277

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001164 IDA RNA polymerase I CORE element sequence-specific DNA binding
GO:0001187 IDA RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity
GO:0001189 IDA RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 NAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0010467 TAS gene expression
GO:0017025 TAS TBP-class protein binding
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070860 IDA RNA polymerase I core factor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075954 Taf1b-201 protein_coding Mus_musculus 0 1362

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