C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PR domain containing 2, with ZNF domain
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116731 PRDM2 9606 + 1:13700198-13825079 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000235372 PRDM2-001 13704855-13825079 protein_coding
  ENST00000311066 PRDM2-201 13704855-13788059 protein_coding
  ENST00000343137 PRDM2-004 13749415-13787657 protein_coding
  ENST00000376048 PRDM2-002 13700240-13825065 protein_coding
  ENST00000407521 PRDM2-014 13749436-13778632 protein_coding
  ENST00000413440 PRDM2-003 13749403-13788079 protein_coding
  ENST00000484063 PRDM2-010 13700198-13749463 protein_coding
  ENST00000487453 PRDM2-009 13771726-13778463 protein_coding
  ENST00000491134 PRDM2-007 13731018-13787067 nonsense_mediated_decay
  ENST00000491815 PRDM2-008 13749424-13773671 retained_intron
  ENST00000502724 PRDM2-013 13738785-13773126 processed_transcript
  ENST00000502727 PRDM2-012 13738750-13773188 processed_transcript
  ENST00000503842 PRDM2-011 13749435-13823499 protein_coding
  ENST00000505823 PRDM2-015 13749436-13823419 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311066ENST00000343137ENST00000376048ENST00000413440ENST00000491134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311066 N/A N/A N/A N/A N/A N/A N/A N/A 1.140±0.00 1.385±0.00 N/A 2.635±0.00 N/A N/A
ENST00000343137 2.106±0.00 4.200±0.00 1.403±0.00 3.607±0.00 3.124±0.00 1.667±0.00 2.017±1.62 1.886±0.95 1.138±0.53 1.332±0.67 2.410±0.72 4.625±0.96 1.339±0.33 3.439±0.43
ENST00000376048 N/A N/A N/A 6.578±1.51 2.426±0.00 2.498±0.00 0.679±0.00 N/A N/A 2.986±0.00 2.324±1.06 5.758±0.00 1.513±0.01 3.210±0.00
ENST00000413440 1.277±0.00 N/A 0.979±0.00 1.485±0.29 1.101±0.00 0.845±0.13 1.159±0.40 1.453±0.00 0.583±0.00 N/A 1.655±1.10 5.615±2.41 3.662±1.91 5.750±1.40
ENST00000491134 N/A N/A N/A N/A N/A 3.136±0.00 N/A 2.250±0.00 N/A 2.974±0.00 2.549±0.00 6.675±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 NAS:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0008270 NAS zinc ion binding
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076451 prdm2b PR domain containing 2, with ZNF domain b protein_coding Danio_rerio
ENSMUSG00000057637 Prdm2 PR domain containing 2, with ZNF domain protein_coding Mus_musculus

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