C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 2, with ZNF domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376048 PRDM2-002 ENSG00000116731 9606 + 1:13700240-13825065 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000376048
Transcript ID Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000376048 6.578±1.51 2.426±0.00 2.498±0.00 0.679±0.00 2.986±0.00 2.324±1.06 5.758±0.00 1.513±0.01 3.210±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 NAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0008270 NAS zinc ion binding
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105778 Prdm2-001 protein_coding Mus_musculus 0 852
ENSMUST00000154280 Prdm2-003 protein_coding Mus_musculus 0 830
ENSMUST00000134791 Prdm2-002 protein_coding Mus_musculus 0 405
ENSMUST00000156909 Prdm2-004 processed_transcript Mus_musculus 0 313

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