C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 5, group A, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116833 NR5A2 9606 + 1:200027602-200177424 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000236914 NR5A2-003 200027614-200175603 protein_coding
  ENST00000367357 NR5A2-005 200043810-200058424 protein_coding
  ENST00000367362 NR5A2-001 200027602-200177424 protein_coding
  ENST00000447034 NR5A2-004 200027883-200039769 protein_coding
  ENST00000474307 NR5A2-002 200027657-200044535 nonsense_mediated_decay
  ENST00000544748 NR5A2-201 200042825-200177420 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000236914ENST00000367357ENST00000367362ENST00000474307ENST00000544748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000236914 N/A N/A N/A N/A 0.467±0.00 N/A 0.187±0.07 4.916±0.00 N/A 0.389±0.00 N/A 0.769±0.00 N/A N/A
ENST00000367357 N/A N/A 0.034±0.00 0.170±0.00 N/A N/A 0.261±0.00 N/A N/A N/A 0.126±0.00 N/A N/A 0.247±0.00
ENST00000367362 N/A N/A N/A N/A N/A 0.416±0.00 N/A 1.762±0.00 0.343±0.00 N/A N/A 0.785±0.00 0.097±0.00 N/A
ENST00000474307 N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A 0.238±0.00 N/A 0.439±0.00 N/A N/A
ENST00000544748 2.373±0.00 3.358±0.00 0.074±0.00 0.020±0.01 1.722±0.00 1.333±0.65 0.236±0.18 2.534±2.06 2.191±1.84 1.611±0.00 0.286±0.00 1.175±0.42 0.105±0.06 1.291±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MU CIL_0007MU_0001 UCNEbase 1:199778718-200463847

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003705 TAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005543 IDA phospholipid binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006355 IDA:IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008206 IEA bile acid metabolic process
GO:0008270 IEA zinc ion binding
GO:0009790 TAS embryo development
GO:0010467 TAS gene expression
GO:0030522 TAS intracellular receptor signaling pathway
GO:0031018 TAS endocrine pancreas development
GO:0042127 IEA regulation of cell proliferation
GO:0042592 NAS homeostatic process
GO:0042632 IEA cholesterol homeostasis
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045070 IDA positive regulation of viral genome replication
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042556 nr5a2 nuclear receptor subfamily 5, group A, member 2 protein_coding Danio_rerio
ENSMUSG00000026398 Nr5a2 nuclear receptor subfamily 5, group A, member 2 protein_coding Mus_musculus

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