C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nuclear receptor subfamily 5, group A, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544748 NR5A2-201 ENSG00000116833 9606 + 1:200042825-200177420 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000544748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000544748 2.373±0.00 3.358±0.00 0.074±0.00 0.020±0.01 1.722±0.00 1.333±0.65 0.236±0.18 2.534±2.06 2.191±1.84 1.611±0.00 0.286±0.00 1.175±0.42 0.105±0.06 1.291±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MU CIL_0007MU_0001 UCNEbase 1:199778718-200463847

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003705 TAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005543 IDA phospholipid binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006355 IDA:IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0009790 TAS embryo development
GO:0010467 TAS gene expression
GO:0030522 TAS intracellular receptor signaling pathway
GO:0031018 TAS endocrine pancreas development
GO:0042592 NAS homeostatic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045070 IDA positive regulation of viral genome replication
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168126 Nr5a2-202 protein_coding Mus_musculus 0 1821
ENSMUST00000027649 Nr5a2-201 protein_coding Mus_musculus 0 1821
ENSMUST00000185373 RP23-158O9.3-001 processed_pseudogene Mus_musculus 0 1050

Loading