C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 5, group A, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367362 NR5A2-001 ENSG00000116833 9606 + 1:200027602-200177424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverOvaryPlacentaENST00000367362
Transcript ID Colon Kidney Liver Ovary Placenta
ENST00000367362 0.416±0.00 1.762±0.00 0.343±0.00 0.785±0.00 0.097±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MU CIL_0007MU_0001 UCNEbase 1:199778718-200463847

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003705 TAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005543 IDA phospholipid binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006355 IDA:IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008206 IEA bile acid metabolic process
GO:0008270 IEA zinc ion binding
GO:0009790 TAS embryo development
GO:0010467 TAS gene expression
GO:0030522 TAS intracellular receptor signaling pathway
GO:0031018 TAS endocrine pancreas development
GO:0042127 IEA regulation of cell proliferation
GO:0042592 NAS homeostatic process
GO:0042632 IEA cholesterol homeostasis
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045070 IDA positive regulation of viral genome replication
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168126 Nr5a2-202 protein_coding Mus_musculus 0 2008
ENSMUST00000027649 Nr5a2-201 protein_coding Mus_musculus 0 2006
ENSMUST00000185373 RP23-158O9.3-001 processed_pseudogene Mus_musculus 0 1149

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