C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-mRNA processing factor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117360 PRPF3 9606 + 1:150321476-150353195 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324862 PRPF3-001 150321476-150353195 protein_coding
  ENST00000467329 PRPF3-007 150327775-150353195 processed_transcript
  ENST00000467514 PRPF3-003 150329752-150334979 processed_transcript
  ENST00000470824 PRPF3-005 150348684-150353195 processed_transcript
  ENST00000476970 PRPF3-004 150345540-150349209 processed_transcript
  ENST00000493553 PRPF3-006 150343151-150344375 processed_transcript
  ENST00000496202 PRPF3-002 150321479-150335030 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324862ENST00000496202
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324862 4.375±0.00 2.396±0.00 1.767±0.00 4.159±0.71 8.409±0.10 5.076±1.63 2.637±1.11 6.555±3.36 4.875±1.47 8.463±5.31 4.682±1.22 22.201±5.60 8.661±1.84 11.816±2.97
ENST00000496202 N/A N/A N/A N/A N/A N/A N/A N/A 4.455±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000244 IDA spliceosomal tri-snRNP complex assembly
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 NAS mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 NAS spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 TAS:IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0015030 IDA Cajal body
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058430 prpf3 PRP3 pre-mRNA processing factor 3 homolog (yeast) protein_coding Danio_rerio
ENSDARG00000086425 prpf3 PRP3 pre-mRNA processing factor 3 homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000015748 Prpf3 PRP3 pre-mRNA processing factor 3 homolog (yeast) protein_coding Mus_musculus

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