C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP3 pre-mRNA processing factor 3 homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015748 Prpf3 10090 - 3:95830124-95855885 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015892 Prpf3-001 95830124-95855885 protein_coding
  ENSMUST00000159901 Prpf3-010 95830589-95835665 protein_coding
  ENSMUST00000160109 Prpf3-006 95847443-95853632 nonsense_mediated_decay
  ENSMUST00000160155 Prpf3-003 95830618-95849574 retained_intron
  ENSMUST00000161073 Prpf3-005 95849536-95855781 retained_intron
  ENSMUST00000161420 Prpf3-007 95843805-95846176 retained_intron
  ENSMUST00000161476 Prpf3-002 95830622-95855753 protein_coding
  ENSMUST00000161482 Prpf3-009 95836489-95845167 processed_transcript
  ENSMUST00000163059 Prpf3-008 95830622-95832808 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015892ENSMUST00000159901ENSMUST00000160155ENSMUST00000161476ENSMUST00000161482ENSMUST00000163059
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015892 2.793±0.90 0.706±0.28 3.715±0.22 4.942±2.53 1.551±0.80 1.144±0.54 1.980±0.57 1.688±0.41 6.759±6.06 2.396±1.11 1.117±0.40 1.129±0.59 5.278±2.67 2.774±1.11
ENSMUST00000159901 N/A N/A N/A N/A 6.233±2.68 N/A 3.573±0.46 4.357±0.80 2.743±1.64 N/A N/A N/A N/A N/A
ENSMUST00000160155 0.782±0.00 0.336±0.00 N/A 1.691±0.00 N/A 1.300±0.14 N/A 0.853±0.21 0.590±0.00 N/A N/A 2.628±1.30 N/A 2.141±0.00
ENSMUST00000161476 N/A N/A 1.694±0.15 2.169±0.79 N/A N/A 0.533±0.00 N/A 0.961±0.86 N/A 3.618±0.62 5.150±2.84 8.413±5.57 1.808±0.83
ENSMUST00000161482 N/A N/A N/A 17.699±0.00 N/A N/A N/A N/A N/A N/A N/A 19.805±0.00 40.006±17.24 N/A
ENSMUST00000163059 N/A 6.220±0.87 N/A N/A 5.402±1.80 3.796±1.92 N/A N/A N/A 5.235±1.15 N/A 6.848±0.98 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000244 ISS spliceosomal tri-snRNP complex assembly
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0015030 IEA Cajal body
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058430 prpf3 PRP3 pre-mRNA processing factor 3 homolog (yeast) protein_coding Danio_rerio
ENSDARG00000086425 prpf3 PRP3 pre-mRNA processing factor 3 homolog (yeast) protein_coding Danio_rerio
ENSG00000117360 PRPF3 pre-mRNA processing factor 3 protein_coding Homo_sapiens

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