C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324862 PRPF3-001 ENSG00000117360 9606 + 1:150321476-150353195 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324862 4.375±0.00 2.396±0.00 1.767±0.00 4.159±0.71 8.409±0.10 5.076±1.63 2.637±1.11 6.555±3.36 4.875±1.47 8.463±5.31 4.682±1.22 22.201±5.60 8.661±1.84 11.816±2.97

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 IDA spliceosomal tri-snRNP complex assembly
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 NAS mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 NAS spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 TAS:IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0015030 IDA Cajal body
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015892 Prpf3-001 protein_coding Mus_musculus 0 3147
ENSMUST00000161476 Prpf3-002 protein_coding Mus_musculus 0 3003
ENSMUST00000160155 Prpf3-003 retained_intron Mus_musculus 0 1681
ENSMUST00000191215 RP23-125B4.2-001 processed_pseudogene Mus_musculus 0 946
ENSMUST00000161482 Prpf3-009 processed_transcript Mus_musculus 0 730
ENSMUST00000120923 Gm11809-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000161420 Prpf3-007 retained_intron Mus_musculus 0 617
ENSMUST00000160109 Prpf3-006 nonsense_mediated_decay Mus_musculus 0 518
ENSMUST00000161073 Prpf3-005 retained_intron Mus_musculus 0 449
ENSMUST00000159901 Prpf3-010 protein_coding Mus_musculus 0 440
ENSMUST00000163059 Prpf3-008 retained_intron Mus_musculus 0 435

Loading