C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP2/Sun domain family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000474844 NSUN4-001 ENSG00000117481 9606 + 1:46340177-46362191 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000474844
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000474844 1.511±0.00 2.859±0.00 0.605±0.00 0.955±0.00 1.904±0.00 1.341±0.00 1.016±0.48 1.968±0.00 1.938±0.00 1.799±0.00 1.746±1.24 3.152±0.22

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005762 IDA mitochondrial large ribosomal subunit
GO:0008168 IDA:IEA methyltransferase activity
GO:0019843 IEA rRNA binding
GO:0031167 IDA rRNA methylation
GO:0042256 IEA mature ribosome assembly
GO:0070131 IEA positive regulation of mitochondrial translation
GO:0070181 IEA small ribosomal subunit rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030475 Nsun4-001 protein_coding Mus_musculus 0 1288
ENSMUST00000165493 Nsun4-006 protein_coding Mus_musculus 0 1203
ENSMUST00000030474 Nsun4-002 nonsense_mediated_decay Mus_musculus 0 739
ENSMUST00000151720 Nsun4-003 processed_transcript Mus_musculus 0 239
ENSMUST00000152712 Nsun4-005 retained_intron Mus_musculus 0 195
ENSMUST00000136655 Nsun4-004 processed_transcript Mus_musculus 4.2039e-45 187

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