C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle-associated membrane protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117533 VAMP4 9606 - 1:171700160-171742247 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000236192 VAMP4-004 171700160-171742247 protein_coding
  ENST00000367740 VAMP4-002 171703950-171742074 protein_coding
  ENST00000474047 VAMP4-001 171701092-171742060 nonsense_mediated_decay
  ENST00000482519 VAMP4-003 171704505-171742065 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000236192ENST00000367740ENST00000474047ENST00000482519
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000236192 1.418±0.00 1.399±0.00 0.590±0.00 3.607±0.12 1.723±0.00 1.169±0.72 0.988±0.34 1.148±0.38 1.082±0.32 2.547±0.35 N/A 1.261±0.61 0.940±0.21 2.324±0.20
ENST00000367740 2.818±0.00 N/A N/A N/A 2.589±0.00 1.608±0.85 1.409±0.00 1.312±0.00 N/A N/A 0.730±0.00 4.525±0.00 1.998±0.76 6.314±0.94
ENST00000474047 N/A N/A 0.415±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.966±0.00 N/A
ENST00000482519 N/A N/A N/A N/A 1.979±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005764 TAS lysosome
GO:0005768 TAS endosome
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0031201 IEA SNARE complex
GO:0035493 IDA SNARE complex assembly
GO:0042996 IEA regulation of Golgi to plasma membrane protein transport
GO:0043001 IEA Golgi to plasma membrane protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043510 vamp4 vesicle-associated membrane protein 4 protein_coding Danio_rerio
ENSMUSG00000026696 Vamp4 vesicle-associated membrane protein 4 protein_coding Mus_musculus

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