C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367740 VAMP4-002 ENSG00000117533 9606 - 1:171703950-171742074 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000367740
Transcript ID Adipose Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000367740 2.818±0.00 2.589±0.00 1.608±0.85 1.409±0.00 1.312±0.00 0.730±0.00 4.525±0.00 1.998±0.76 6.314±0.94

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005764 TAS lysosome
GO:0005768 TAS endosome
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0035493 IDA SNARE complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000135241 Vamp4-002 protein_coding Mus_musculus 0 1051
ENSMUST00000155003 Vamp4-006 protein_coding Mus_musculus 0 992
ENSMUST00000150040 Vamp4-004 protein_coding Mus_musculus 0 819
ENSMUST00000138499 Vamp4-007 processed_transcript Mus_musculus 0 732
ENSMUST00000132158 Vamp4-003 protein_coding Mus_musculus 0 652
ENSMUST00000050010 Vamp4-001 protein_coding Mus_musculus 0 593
ENSMUST00000128704 Vamp4-005 retained_intron Mus_musculus 0 300

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