C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle-associated membrane protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026696 Vamp4 10090 + 1:162570515-162599084 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050010 Vamp4-001 162570828-162599078 protein_coding
  ENSMUST00000128704 Vamp4-005 162570732-162582180 retained_intron
  ENSMUST00000132158 Vamp4-003 162570515-162599084 protein_coding
  ENSMUST00000135241 Vamp4-002 162570590-162595365 protein_coding
  ENSMUST00000138499 Vamp4-007 162574821-162594753 processed_transcript
  ENSMUST00000150040 Vamp4-004 162570837-162594772 protein_coding
  ENSMUST00000155003 Vamp4-006 162571226-162595365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050010ENSMUST00000132158ENSMUST00000135241ENSMUST00000150040ENSMUST00000155003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050010 N/A 2.155±0.39 1.348±0.00 4.353±2.11 1.890±0.54 1.543±0.19 N/A 2.006±0.24 1.016±0.31 2.450±0.19 N/A 3.324±1.15 0.773±0.31 N/A
ENSMUST00000132158 1.516±0.71 N/A 4.215±2.08 4.327±0.63 2.061±0.36 1.432±0.15 0.627±0.25 1.691±0.16 0.853±0.39 2.240±0.00 0.844±0.17 3.051±1.51 0.738±0.22 7.033±1.70
ENSMUST00000135241 5.106±0.82 12.481±2.70 7.925±1.62 6.576±1.21 7.880±3.02 9.488±2.63 3.117±0.29 6.379±1.11 3.905±1.15 8.420±1.62 2.968±0.31 6.668±2.38 4.756±1.62 9.157±0.74
ENSMUST00000150040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.177±0.00 10.820±0.26 34.551±0.00
ENSMUST00000155003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.043±0.02 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X5 CIL_0007X5_0002 VISTA 1:162530457-163133967

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane
GO:0031201 IDA SNARE complex
GO:0035493 IEA SNARE complex assembly
GO:0042996 IMP regulation of Golgi to plasma membrane protein transport
GO:0043001 IMP Golgi to plasma membrane protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043510 vamp4 vesicle-associated membrane protein 4 protein_coding Danio_rerio
ENSG00000117533 VAMP4 vesicle-associated membrane protein 4 protein_coding Homo_sapiens

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