C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000236192 VAMP4-004 ENSG00000117533 9606 - 1:171700160-171742247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000236192
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000236192 1.418±0.00 1.399±0.00 0.590±0.00 3.607±0.12 1.723±0.00 1.169±0.72 0.988±0.34 1.148±0.38 1.082±0.32 2.547±0.35 1.261±0.61 0.940±0.21 2.324±0.20

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005764 TAS lysosome
GO:0005768 TAS endosome
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0031201 IEA SNARE complex
GO:0035493 IDA SNARE complex assembly
GO:0042996 IEA regulation of Golgi to plasma membrane protein transport
GO:0043001 IEA Golgi to plasma membrane protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000135241 Vamp4-002 protein_coding Mus_musculus 0 1280
ENSMUST00000155003 Vamp4-006 protein_coding Mus_musculus 0 1197
ENSMUST00000150040 Vamp4-004 protein_coding Mus_musculus 0 832
ENSMUST00000138499 Vamp4-007 processed_transcript Mus_musculus 0 745
ENSMUST00000132158 Vamp4-003 protein_coding Mus_musculus 0 708
ENSMUST00000050010 Vamp4-001 protein_coding Mus_musculus 0 608
ENSMUST00000128704 Vamp4-005 retained_intron Mus_musculus 0 313

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