C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S25
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118181 RPS25 9606 - 11:119015712-119018691 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000524864 RPS25-002 119017361-119018666 retained_intron
  ENST00000527673 RPS25-001 119015712-119018690 protein_coding
  ENST00000527791 RPS25-003 119015712-119018678 nonsense_mediated_decay
  ENST00000527853 RPS25-008 119015726-119018691 retained_intron
  ENST00000528547 RPS25-007 119017698-119018044 processed_transcript
  ENST00000532567 RPS25-005 119015712-119018330 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000527673ENST00000527791ENST00000532567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000527673 477.016±0.00 596.571±0.00 44.623±0.00 220.475±103.16 309.128±169.50 379.496±264.04 149.944±64.84 223.550±102.95 188.199±2.05 371.014±198.26 323.566±167.91 775.249±571.15 650.392±221.54 425.266±166.61
ENST00000527791 N/A N/A N/A 31.909±0.00 43.188±0.00 42.331±0.00 N/A 36.638±0.00 N/A N/A 65.800±0.00 50.068±0.00 N/A N/A
ENST00000532567 N/A 226.814±0.00 N/A N/A N/A 242.645±0.00 N/A 198.282±0.00 N/A N/A N/A 270.949±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021U CIL_00021U_0002 CGP 11:118971707-119015791

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IDA ribosome
GO:0006412 IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041811 rps25 ribosomal protein S25 protein_coding Danio_rerio
ENSMUSG00000009927 Rps25 ribosomal protein S25 protein_coding Mus_musculus

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