C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00021U_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004864-ENSDARG00000059606 CGP 7955 5:60147744-60164937
GeneTranscriptPositionBiotype
ENSDARG00000004864 (FOXR1)
forkhead box R1 		ENSDART00000019561 (FOXR1-201) 60147744-60153128 protein_coding
ENSDARG00000059606 (ccdc84)
coiled-coil domain containing 84 		ENSDART00000083015 (ccdc84-201) 60156223-60164937 protein_coding
ENSDART00000130319 (ccdc84-202) 60156299-60164321 protein_coding
ENSDARG00000067634 (arhgef12b)
Rho guanine nucleotide exchange factor (GEF) 12b 		ENSDART00000087610 (arhgef12b-201) 60164514-60230293 protein_coding
ENSDART00000156198 (arhgef12b-001) 60164511-60243120 protein_coding
ENSDARG00000097936 (si:ch211-67b18.1)
si:ch211-67b18.1 		ENSDART00000156274 (si:ch211-67b18.1-001) 60144955-60148100 antisense

Danio rerio Ensembl (Zv9)

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CIL_00021U_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176302-ENSG00000186166 CGP 9606 11:118971707-119015791
GeneTranscriptPositionBiotype
ENSG00000176302 (FOXR1)
forkhead box R1 		ENST00000317011 (FOXR1-001) 118971707-118981291 protein_coding
ENST00000531539 (FOXR1-002) 118971712-118981264 nonsense_mediated_decay
ENST00000533282 (FOXR1-003) 118978779-118980572 protein_coding
ENSG00000240970 (RPL23AP64)
ribosomal protein L23a pseudogene 64 		ENST00000469465 (RPL23AP64-001) 119003012-119003446 processed_pseudogene
ENSG00000254428 (RP11-110I1.11)
 ENST00000531087 (RP11-110I1.11-001) 119003742-119004893 antisense
ENSG00000254909 (RP11-110I1.5)
 ENST00000527269 (RP11-110I1.5-001) 119005727-119005934 processed_pseudogene
ENSG00000255121 (RP11-110I1.12)
 ENST00000526453 (RP11-110I1.12-001) 118996195-118998004 lincRNA
ENST00000582695 (RP11-110I1.12-002) 118994824-118996604 lincRNA
ENSG00000273625 (Y_RNA)
Y RNA 		ENST00000613583 (Y_RNA.1-979) 118994560-118994655 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00021U_0001ENSDARG00000004864ENSDART00000019561ENSDARG00000059606ENSDART00000083015ENSDART00000130319ENSDARG00000067634ENSDART00000087610ENSDART00000156198ENSDARG00000097936ENSDART00000156274CIL_00021U_0002ENSG00000176302ENST00000317011ENST00000531539ENST00000533282ENSG00000240970ENST00000469465ENSG00000254428ENST00000531087ENSG00000254909ENST00000527269ENSG00000255121ENST00000526453ENST00000582695ENSG00000273625ENST00000613583
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00021U_0001ENSDARG00000004864ENSDART00000019561ENSDARG00000059606ENSDART00000083015ENSDARG00000067634ENSDART00000087610ENSDART00000156198ENSDARG00000097936ENSDART00000156274CIL_00021U_0002ENSG00000176302ENST00000317011ENST00000531539ENST00000533282ENSG00000240970ENST00000469465ENSG00000254428ENST00000531087ENSG00000254909ENST00000527269ENSG00000255121ENST00000526453ENST00000582695ENSG00000273625ENST00000613583
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004864 ENSDART00000019561 N/A N/A N/A 0.170±0.07 N/A N/A 0.103±0.00 2.733±0.00 0.096±0.00 N/A N/A N/A N/A N/A
ENSDARG00000059606 ENSDART00000083015 N/A N/A N/A 6.546±1.93 N/A N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A N/A
ENSDART00000130319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000067634 ENSDART00000087610 N/A N/A N/A 2.852±2.14 N/A N/A 7.591±6.80 3.355±1.14 N/A N/A N/A N/A N/A N/A
ENSDART00000156198 N/A N/A N/A 4.781±1.35 N/A N/A 4.736±1.25 1.920±0.00 0.645±0.00 N/A 1.931±0.00 N/A N/A N/A
ENSDARG00000097936 ENSDART00000156274 N/A N/A N/A 0.095±0.00 N/A N/A 0.132±0.00 N/A N/A N/A 0.161±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000176302 ENST00000317011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A 3.560±0.00
ENST00000531539 N/A 0.072±0.00 N/A 0.086±0.00 N/A 0.047±0.00 N/A N/A N/A N/A N/A 0.058±0.00 N/A 0.305±0.00
ENST00000533282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.00 0.103±0.00 1.444±0.00
ENSG00000240970 ENST00000469465 0.488±0.00 4.524±0.00 0.129±0.00 0.927±0.62 N/A 0.619±0.01 0.363±0.11 0.299±0.00 0.213±0.09 0.234±0.15 1.052±0.00 1.345±0.67 0.103±0.04 0.786±0.52
ENSG00000254428 ENST00000531087 1.241±0.00 5.371±0.00 N/A 0.715±0.00 2.095±0.00 0.315±0.00 0.416±0.00 0.594±0.00 0.507±0.22 1.739±0.85 0.818±0.00 1.353±0.58 0.359±0.12 0.606±0.16
ENSG00000254909 ENST00000527269 0.782±0.00 3.669±0.00 N/A 3.183±1.88 1.414±0.44 0.130±0.00 0.787±0.00 0.478±0.00 3.839±3.35 0.485±0.00 N/A 4.050±2.47 0.485±0.00 0.686±0.30
ENSG00000255121 ENST00000526453 0.535±0.00 1.787±0.00 0.142±0.00 0.411±0.00 0.122±0.00 0.131±0.00 0.200±0.12 1.061±0.00 N/A 0.123±0.02 0.032±0.00 0.360±0.23 0.640±0.10 0.364±0.13
ENST00000582695 N/A 0.456±0.00 N/A N/A 0.174±0.00 N/A 0.182±0.00 N/A 0.205±0.00 0.685±0.00 N/A 0.541±0.00 0.294±0.00 N/A
ENSG00000273625 ENST00000613583 N/A N/A N/A N/A N/A N/A 0.368±0.00 1.736±0.00 N/A N/A N/A N/A N/A N/A

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