C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transthyretin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118271 TTR 9606 + 18:31591726-31599021 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000237014 TTR-001 31591726-31599011 protein_coding
  ENST00000432547 TTR-002 31591877-31593545 retained_intron
  ENST00000541025 TTR-003 31591877-31595849 retained_intron
  ENST00000610404 TTR-201 31591767-31599021 protein_coding
  ENST00000613781 TTR-202 31591767-31598675 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000237014ENST00000541025ENST00000613781
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000237014 N/A N/A 388.698±207.12 1.804±1.66 0.559±0.50 0.340±0.00 883.915±883.14 170.253±169.86 0.013±0.00 N/A 0.908±0.35 2.045±1.11 0.683±0.44
ENST00000541025 N/A N/A N/A 0.075±0.00 N/A 0.056±0.00 0.092±0.00 N/A N/A N/A N/A N/A N/A
ENST00000613781 0.094±0.00 1.475±0.00 437.782±217.19 6.908±0.00 1.251±0.00 0.031±0.00 1831.920±1831.59 79.156±77.91 0.651±0.00 0.682±0.00 3.075±2.98 19.725±0.00 1.761±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TY CIL_0003TY_0001 CGP 18:31498043-31599021
CIL_0002FO CIL_0002FO_0002 CGP 18:31591726-31685836

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005179 IEA hormone activity
GO:0005515 IPI protein binding
GO:0005576 NAS extracellular region
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0006810 IEA transport
GO:0007603 TAS phototransduction, visible light
GO:0030198 TAS extracellular matrix organization
GO:0042562 IEA hormone binding
GO:0042572 IEA retinol metabolic process
GO:0042802 IPI identical protein binding
GO:0043234 IEA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037191 ttr transthyretin (prealbumin, amyloidosis type I) protein_coding Danio_rerio
ENSMUSG00000061808 Ttr transthyretin protein_coding Mus_musculus

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