C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transthyretin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000237014 TTR-001 ENSG00000118271 9606 + 18:31591726-31599011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000237014
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000237014 388.698±207.12 1.804±1.66 0.559±0.50 0.340±0.00 883.915±883.14 170.253±169.86 0.013±0.00 0.908±0.35 2.045±1.11 0.683±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TY CIL_0003TY_0001 CGP 18:31498043-31599021
CIL_0002FO CIL_0002FO_0002 CGP 18:31591726-31685836

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005179 IEA hormone activity
GO:0005515 IPI protein binding
GO:0005576 NAS extracellular region
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0006810 IEA transport
GO:0007603 TAS phototransduction, visible light
GO:0030198 TAS extracellular matrix organization
GO:0042562 IEA hormone binding
GO:0042572 IEA retinol metabolic process
GO:0042802 IPI identical protein binding
GO:0043234 IEA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075312 Ttr-201 protein_coding Mus_musculus 0 527

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