C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cancer susceptibility candidate 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118307 CASC1 9606 - 12:25108420-25195162 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320267 CASC1-001 25108420-25195160 protein_coding
  ENST00000354189 CASC1-004 25108420-25195098 protein_coding
  ENST00000395987 CASC1-003 25108420-25195144 protein_coding
  ENST00000395990 CASC1-002 25108420-25195160 protein_coding
  ENST00000545133 CASC1-009 25108424-25195126 protein_coding
  ENST00000554347 CASC1-013 25154341-25195130 protein_coding
  ENST00000554533 CASC1-005 25108421-25195162 nonsense_mediated_decay
  ENST00000555240 CASC1-007 25154375-25195127 retained_intron
  ENST00000555554 CASC1-014 25111817-25149692 processed_transcript
  ENST00000556006 CASC1-010 25108420-25158563 protein_coding
  ENST00000556467 CASC1-011 25149762-25195160 nonsense_mediated_decay
  ENST00000556547 CASC1-012 25149628-25195157 retained_intron
  ENST00000557684 CASC1-008 25114657-25195126 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000320267ENST00000395987ENST00000545133ENST00000554347ENST00000554533ENST00000555240ENST00000555554ENST00000556006ENST00000556547ENST00000557684
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000320267 0.475±0.00 0.479±0.00 N/A N/A N/A N/A N/A N/A 0.499±0.60 0.015±0.00 1.954±0.00
ENST00000395987 N/A 0.448±0.07 N/A N/A N/A N/A N/A 0.212±0.00 N/A 0.024±0.00 9.795±4.41
ENST00000545133 N/A N/A N/A 0.015±0.00 0.044±0.00 N/A 0.175±0.00 N/A N/A N/A 4.214±0.00
ENST00000554347 N/A N/A N/A N/A 0.094±0.01 N/A 0.623±0.00 N/A N/A 0.047±0.00 N/A
ENST00000554533 N/A 0.220±0.00 N/A N/A 0.028±0.00 0.216±0.00 N/A 1.016±0.00 N/A N/A N/A
ENST00000555240 0.747±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555554 N/A N/A N/A 0.297±0.19 N/A N/A N/A N/A N/A N/A N/A
ENST00000556006 N/A N/A N/A N/A N/A 0.134±0.00 N/A 1.426±0.00 N/A 0.023±0.00 N/A
ENST00000556547 N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.100±0.00 N/A N/A
ENST00000557684 0.188±0.00 0.314±0.00 0.204±0.00 N/A N/A N/A N/A 1.059±0.00 0.082±0.01 N/A 6.278±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XC CIL_0004XC_0001 CGP 12:25021002-25195162
CIL_0004XD CIL_0004XD_0001 CGP 12:25108420-25209645

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005881 IEA cytoplasmic microtubule
GO:0008017 IEA microtubule binding
GO:0048487 IEA beta-tubulin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016815 casc1 cancer susceptibility candidate 1 protein_coding Danio_rerio
ENSMUSG00000043541 Casc1 cancer susceptibility candidate 1 protein_coding Mus_musculus

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