C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cancer susceptibility candidate 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043541 Casc1 10090 - 6:145174834-145210970 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060797 Casc1-001 145174834-145210970 protein_coding
  ENSMUST00000111727 Casc1-003 145174834-145205347 retained_intron
  ENSMUST00000111728 Casc1-005 145174834-145210791 protein_coding
  ENSMUST00000128070 Casc1-006 145202894-145210879 retained_intron
  ENSMUST00000133671 Casc1-004 145192892-145210869 processed_transcript
  ENSMUST00000152138 Casc1-002 145190268-145210899 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060797ENSMUST00000111727ENSMUST00000111728ENSMUST00000152138
Transcript ID Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060797 0.320±0.00 N/A N/A N/A 0.078±0.00 1.830±0.28 N/A 14.138±10.22
ENSMUST00000111727 0.194±0.01 0.188±0.00 0.055±0.00 1.544±0.41 0.036±0.01 1.729±0.77 0.189±0.04 2.201±0.27
ENSMUST00000111728 N/A N/A N/A N/A N/A N/A N/A 3.359±0.00
ENSMUST00000152138 N/A N/A N/A N/A 0.124±0.02 1.596±0.31 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XB CIL_0008XB_0002 VISTA 6:144644642-145246014
CIL_0004XC CIL_0004XC_0002 CGP 6:145115653-145210970
CIL_0004XD CIL_0004XD_0002 CGP 6:145174834-145216939

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005881 IDA cytoplasmic microtubule
GO:0008017 IDA microtubule binding
GO:0048487 IDA beta-tubulin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016815 casc1 cancer susceptibility candidate 1 protein_coding Danio_rerio
ENSG00000118307 CASC1 cancer susceptibility candidate 1 protein_coding Homo_sapiens

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