C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004XD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000118307-ENSG00000205707 CGP 9606 12:25108420-25209645
GeneTranscriptPositionBiotype
ENSG00000118307 (CASC1)
cancer susceptibility candidate 1 		ENST00000320267 (CASC1-001) 25108420-25195160 protein_coding
ENST00000354189 (CASC1-004) 25108420-25195098 protein_coding
ENST00000395987 (CASC1-003) 25108420-25195144 protein_coding
ENST00000395990 (CASC1-002) 25108420-25195160 protein_coding
ENST00000545133 (CASC1-009) 25108424-25195126 protein_coding
ENST00000554347 (CASC1-013) 25154341-25195130 protein_coding
ENST00000554533 (CASC1-005) 25108421-25195162 nonsense_mediated_decay
ENST00000555240 (CASC1-007) 25154375-25195127 retained_intron
ENST00000555554 (CASC1-014) 25111817-25149692 processed_transcript
ENST00000556006 (CASC1-010) 25108420-25158563 protein_coding
ENST00000556467 (CASC1-011) 25149762-25195160 nonsense_mediated_decay
ENST00000556547 (CASC1-012) 25149628-25195157 retained_intron
ENST00000557684 (CASC1-008) 25114657-25195126 processed_transcript
ENSG00000133703 (KRAS)
Kirsten rat sarcoma viral oncogene homolog 		ENST00000256078 (KRAS-004) 25209431-25250803 protein_coding
ENST00000311936 (KRAS-001) 25204789-25250931 protein_coding
ENST00000556131 (KRAS-002) 25233819-25250929 protein_coding
ENST00000557334 (KRAS-003) 25209168-25250936 protein_coding
ENSG00000205707 (LYRM5)
LYR motif containing 5 		ENST00000381356 (LYRM5-201) 25195216-25205014 protein_coding
ENST00000553788 (LYRM5-006) 25195277-25209645 protein_coding
ENST00000554266 (LYRM5-004) 25195270-25204172 protein_coding
ENST00000555151 (LYRM5-010) 25195277-25196184 processed_transcript
ENST00000555711 (LYRM5-003) 25195261-25204683 protein_coding
ENST00000556198 (LYRM5-011) 25195553-25204147 protein_coding
ENST00000556351 (LYRM5-005) 25195272-25204666 protein_coding
ENST00000556402 (LYRM5-007) 25195277-25204732 protein_coding
ENST00000556885 (LYRM5-002) 25195265-25205015 protein_coding
ENST00000556927 (LYRM5-009) 25195272-25204670 protein_coding
ENST00000557540 (LYRM5-001) 25195216-25205135 protein_coding
CIL_0004XD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000043541-ENSMUSG00000040370 CGP 10090 6:145174834-145216939
GeneTranscriptPositionBiotype
ENSMUSG00000030263 (Lrmp)
lymphoid-restricted membrane protein 		ENSMUST00000032396 (Lrmp-001) 145121739-145174934 protein_coding
ENSMUST00000125029 (Lrmp-007) 145145474-145158660 retained_intron
ENSMUST00000132937 (Lrmp-009) 145157747-145171704 processed_transcript
ENSMUST00000132948 (Lrmp-004) 145145477-145174928 protein_coding
ENSMUST00000135191 (Lrmp-010) 145169505-145171989 retained_intron
ENSMUST00000135984 (Lrmp-003) 145115653-145174928 nonsense_mediated_decay
ENSMUST00000143631 (Lrmp-002) 145121781-145160968 retained_intron
ENSMUST00000149244 (Lrmp-005) 145121742-145168684 retained_intron
ENSMUST00000152571 (Lrmp-006) 145137497-145160415 protein_coding
ENSMUST00000156849 (Lrmp-008) 145145474-145160981 protein_coding
ENSMUSG00000030265 (Kras)
v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 		ENSMUST00000032399 (Kras-001) 145216699-145250239 protein_coding
ENSMUST00000111710 (Kras-002) 145220245-145250177 protein_coding
ENSMUST00000123972 (Kras-005) 145219980-145230824 processed_transcript
ENSMUST00000149314 (Kras-004) 145220610-145225557 retained_intron
ENSMUST00000155145 (Kras-003) 145246704-145250202 protein_coding
ENSMUST00000156486 (Kras-006) 145220297-145250170 nonsense_mediated_decay
ENSMUSG00000043541 (Casc1)
cancer susceptibility candidate 1 		ENSMUST00000060797 (Casc1-001) 145174834-145210970 protein_coding
ENSMUST00000111727 (Casc1-003) 145174834-145205347 retained_intron
ENSMUST00000111728 (Casc1-005) 145174834-145210791 protein_coding
ENSMUST00000128070 (Casc1-006) 145202894-145210879 retained_intron
ENSMUST00000133671 (Casc1-004) 145192892-145210869 processed_transcript
ENSMUST00000152138 (Casc1-002) 145190268-145210899 retained_intron
ENSMUSG00000086863 (Gm15543)
predicted gene 15543 		ENSMUST00000141307 (Gm15543-001) 145182275-145187630 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XD_0001ENSG00000118307ENST00000320267ENST00000354189ENST00000395987ENST00000395990ENST00000545133ENST00000554347ENST00000554533ENST00000555240ENST00000555554ENST00000556006ENST00000556467ENST00000556547ENST00000557684ENSG00000133703ENST00000256078ENST00000311936ENST00000556131ENST00000557334ENSG00000205707ENST00000381356ENST00000553788ENST00000554266ENST00000555151ENST00000555711ENST00000556198ENST00000556351ENST00000556402ENST00000556885ENST00000556927ENST00000557540CIL_0004XD_0002ENSMUSG00000030263ENSMUST00000032396ENSMUST00000125029ENSMUST00000132937ENSMUST00000132948ENSMUST00000135191ENSMUST00000135984ENSMUST00000143631ENSMUST00000149244ENSMUST00000152571ENSMUST00000156849ENSMUSG00000030265ENSMUST00000032399ENSMUST00000111710ENSMUST00000123972ENSMUST00000149314ENSMUST00000155145ENSMUST00000156486ENSMUSG00000043541ENSMUST00000060797ENSMUST00000111727ENSMUST00000111728ENSMUST00000128070ENSMUST00000133671ENSMUST00000152138ENSMUSG00000086863ENSMUST00000141307
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XD_0001ENSG00000118307ENST00000320267ENST00000395987ENST00000545133ENST00000554347ENST00000554533ENST00000555240ENST00000555554ENST00000556006ENST00000556547ENST00000557684ENSG00000133703ENST00000256078ENST00000311936ENSG00000205707ENST00000381356ENST00000556885CIL_0004XD_0002ENSMUSG00000030263ENSMUST00000032396ENSMUST00000132937ENSMUST00000132948ENSMUST00000135984ENSMUST00000143631ENSMUST00000149244ENSMUST00000152571ENSMUSG00000030265ENSMUST00000032399ENSMUST00000111710ENSMUST00000123972ENSMUST00000156486ENSMUSG00000043541ENSMUST00000060797ENSMUST00000111727ENSMUST00000111728ENSMUST00000152138ENSMUSG00000086863ENSMUST00000141307
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118307 ENST00000320267 N/A N/A 0.475±0.00 0.479±0.00 N/A N/A N/A N/A N/A N/A N/A 0.499±0.60 0.015±0.00 1.954±0.00
ENST00000354189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395987 N/A N/A N/A 0.448±0.07 N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A 0.024±0.00 9.795±4.41
ENST00000395990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545133 N/A N/A N/A N/A N/A 0.015±0.00 0.044±0.00 N/A 0.175±0.00 N/A N/A N/A N/A 4.214±0.00
ENST00000554347 N/A N/A N/A N/A N/A N/A 0.094±0.01 N/A 0.623±0.00 N/A N/A N/A 0.047±0.00 N/A
ENST00000554533 N/A N/A N/A 0.220±0.00 N/A N/A 0.028±0.00 0.216±0.00 N/A 1.016±0.00 N/A N/A N/A N/A
ENST00000555240 N/A N/A 0.747±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555554 N/A N/A N/A N/A N/A 0.297±0.19 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556006 N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A 1.426±0.00 N/A N/A 0.023±0.00 N/A
ENST00000556467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556547 N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A 0.100±0.00 N/A N/A
ENST00000557684 N/A N/A 0.188±0.00 0.314±0.00 0.204±0.00 N/A N/A N/A N/A 1.059±0.00 N/A 0.082±0.01 N/A 6.278±0.00
ENSG00000133703 ENST00000256078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.564±0.00 N/A N/A
ENST00000311936 6.924±0.00 4.940±0.00 2.215±0.00 7.943±1.55 2.309±0.42 3.816±0.56 1.939±0.85 2.502±0.37 1.745±0.20 4.263±1.41 2.523±0.00 3.935±1.01 4.343±1.84 4.194±0.28
ENST00000556131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000205707 ENST00000381356 N/A N/A N/A 7.820±0.00 4.293±0.00 N/A 3.648±2.09 14.543±0.00 5.217±0.00 N/A N/A N/A N/A 15.411±0.00
ENST00000553788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556885 N/A N/A 3.742±0.00 13.141±0.00 4.270±0.00 8.056±0.00 7.181±5.20 11.013±0.00 15.943±0.00 N/A 6.873±3.98 8.899±0.00 4.510±1.61 14.008±0.26
ENST00000556927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030263 ENSMUST00000032396 1.993±0.36 1.550±0.36 1.310±0.30 0.262±0.13 10.539±3.16 N/A 1.280±0.13 0.887±0.43 3.457±3.19 2.710±0.58 0.220±0.21 1.546±0.48 0.391±0.04 N/A
ENSMUST00000125029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.927±0.00 N/A
ENSMUST00000132948 N/A 1.279±0.20 1.152±0.06 0.150±0.00 11.284±5.52 14.047±2.31 N/A N/A 3.903±1.35 3.174±0.54 0.439±0.59 2.484±0.58 0.424±0.08 N/A
ENSMUST00000135191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135984 0.785±0.00 0.954±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 4.550±0.00 0.534±0.16 N/A
ENSMUST00000143631 1.884±0.00 N/A N/A N/A 6.208±1.77 N/A N/A 0.523±0.16 4.030±1.01 2.378±0.22 0.116±0.00 1.551±0.00 0.525±0.00 N/A
ENSMUST00000149244 N/A N/A N/A N/A N/A 2.365±0.00 N/A N/A 0.307±0.14 N/A 0.198±0.19 1.625±0.00 0.180±0.00 N/A
ENSMUST00000152571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.230±0.00 N/A 1.027±0.00 N/A
ENSMUST00000156849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030265 ENSMUST00000032399 6.327±1.53 2.835±0.65 10.489±1.14 26.116±1.57 5.634±1.35 15.831±5.66 5.290±0.93 6.565±1.34 10.361±4.95 16.339±2.74 3.491±0.45 7.759±1.51 12.115±6.15 2.900±1.11
ENSMUST00000111710 N/A N/A N/A 14.291±0.00 N/A N/A N/A N/A N/A N/A N/A 9.209±0.00 16.040±3.20 4.923±0.00
ENSMUST00000123972 N/A N/A N/A N/A 9.036±1.04 21.338±0.00 N/A N/A N/A 20.044±1.45 N/A 15.108±2.39 N/A 6.249±0.83
ENSMUST00000149314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156486 N/A N/A N/A 18.888±0.00 N/A N/A N/A N/A N/A N/A N/A 10.819±0.00 16.293±0.33 8.263±0.00
ENSMUSG00000043541 ENSMUST00000060797 N/A N/A N/A 0.320±0.00 N/A N/A N/A N/A N/A N/A 0.078±0.00 1.830±0.28 N/A 14.138±10.22
ENSMUST00000111727 N/A N/A N/A 0.194±0.01 N/A N/A N/A 0.188±0.00 0.055±0.00 1.544±0.41 0.036±0.01 1.729±0.77 0.189±0.04 2.201±0.27
ENSMUST00000111728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.359±0.00
ENSMUST00000128070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.02 1.596±0.31 N/A N/A
ENSMUSG00000086863 ENSMUST00000141307 N/A N/A N/A N/A 0.403±0.17 N/A 140.542±25.26 0.229±0.08 0.100±0.04 2.519±0.62 10.201±2.33 27.103±27.88 0.128±0.11 5.160±1.52

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