C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118420 UBE3D 9606 - 6:82892398-83065841 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000237186 UBE3D-004 82892398-83065841 nonsense_mediated_decay
  ENST00000369746 UBE3D-001 83017182-83057969 nonsense_mediated_decay
  ENST00000369747 UBE3D-003 82892398-83065841 protein_coding
  ENST00000430071 UBE3D-002 82893025-83065839 nonsense_mediated_decay
  ENST00000503942 UBE3D-007 82892467-82894033 processed_transcript
  ENST00000505226 UBE3D-006 83036026-83065823 nonsense_mediated_decay
  ENST00000509102 UBE3D-005 82892953-83065751 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000237186ENST00000369746ENST00000369747ENST00000430071ENST00000503942ENST00000505226ENST00000509102
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000237186 N/A N/A N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A
ENST00000369746 N/A N/A 0.611±0.00 0.087±0.00 N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000369747 N/A N/A N/A 0.688±0.37 N/A 0.574±0.00 0.264±0.00 N/A N/A N/A N/A 0.959±0.37 0.713±0.14 0.347±0.00
ENST00000430071 0.372±0.00 N/A N/A N/A 0.815±0.04 N/A N/A 0.486±0.00 N/A 0.238±0.00 N/A N/A N/A 0.571±0.00
ENST00000503942 0.547±0.00 0.802±0.00 N/A 0.817±0.00 0.214±0.00 0.705±0.00 0.811±0.00 0.836±0.35 0.287±0.00 1.323±0.11 0.344±0.00 1.757±0.00 1.383±0.00 1.283±0.03
ENST00000505226 N/A N/A N/A 0.068±0.00 0.062±0.00 0.102±0.00 N/A 0.092±0.00 N/A 0.066±0.00 N/A N/A 0.123±0.00 0.438±0.00
ENST00000509102 0.597±0.00 1.100±0.00 N/A 0.645±0.00 N/A 0.947±0.00 0.630±0.00 0.968±0.59 0.696±0.22 0.770±0.27 0.990±0.00 0.500±0.00 0.383±0.02 0.437±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GG CIL_0006GG_0001 CGP 6:82363206-83065841
CIL_000673 CIL_000673_0001 CGP 6:82892398-83171350

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026178 ube3d ubiquitin protein ligase E3D protein_coding Danio_rerio
ENSMUSG00000032415 Ube2cbp ubiquitin-conjugating enzyme E2C binding protein protein_coding Mus_musculus

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