C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polyamine modulated factor 1 binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118557 PMFBP1 9606 - 16:72112157-72176878 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000237353 PMFBP1-001 72119097-72172255 protein_coding
  ENST00000355636 PMFBP1-201 72119100-72171271 protein_coding
  ENST00000379073 PMFBP1-004 72119101-72172450 nonsense_mediated_decay
  ENST00000535461 PMFBP1-009 72150774-72171435 protein_coding
  ENST00000536211 PMFBP1-010 72154421-72172470 protein_coding
  ENST00000537392 PMFBP1-005 72124920-72150652 nonsense_mediated_decay
  ENST00000537465 PMFBP1-003 72119097-72172152 protein_coding
  ENST00000537792 PMFBP1-011 72112157-72124853 protein_coding
  ENST00000539172 PMFBP1-008 72154294-72171897 protein_coding
  ENST00000540440 PMFBP1-006 72164786-72176878 protein_coding
  ENST00000543746 PMFBP1-007 72154307-72172103 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000237353ENST00000537392ENST00000537792
Transcript ID Ovary Placenta Testis
ENST00000237353 N/A N/A 11.408±0.00
ENST00000537392 N/A N/A 12.062±0.00
ENST00000537792 11.192±0.00 6.777±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098E CIL_00098E_0001 VISTA 16:71920667-72521926
CIL_00098B CIL_00098B_0001 VISTA 16:71941307-72542883
CIL_0008FG CIL_0008FG_0001 VISTA 16:72070634-72673692
CIL_0004Y7 CIL_0004Y7_0002 CGP 16:72093562-72176878

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087389 PMFBP1 polyamine modulated factor 1 binding protein 1 protein_coding Danio_rerio
ENSMUSG00000031727 Pmfbp1 polyamine modulated factor 1 binding protein 1 protein_coding Mus_musculus

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