C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008FG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs108 VISTA 9606 16:72070634-72673692
GeneTranscriptPositionBiotype
ENSG00000118557 (PMFBP1)
polyamine modulated factor 1 binding protein 1 		ENST00000237353 (PMFBP1-001) 72119097-72172255 protein_coding
ENST00000355636 (PMFBP1-201) 72119100-72171271 protein_coding
ENST00000379073 (PMFBP1-004) 72119101-72172450 nonsense_mediated_decay
ENST00000535461 (PMFBP1-009) 72150774-72171435 protein_coding
ENST00000536211 (PMFBP1-010) 72154421-72172470 protein_coding
ENST00000537392 (PMFBP1-005) 72124920-72150652 nonsense_mediated_decay
ENST00000537465 (PMFBP1-003) 72119097-72172152 protein_coding
ENST00000537792 (PMFBP1-011) 72112157-72124853 protein_coding
ENST00000539172 (PMFBP1-008) 72154294-72171897 protein_coding
ENST00000540440 (PMFBP1-006) 72164786-72176878 protein_coding
ENST00000543746 (PMFBP1-007) 72154307-72172103 processed_transcript
ENSG00000140829 (DHX38)
DEAH (Asp-Glu-Ala-His) box polypeptide 38 		ENST00000268482 (DHX38-001) 72093562-72112912 protein_coding
ENST00000562774 (DHX38-017) 72104486-72112908 protein_coding
ENST00000563650 (DHX38-009) 72097160-72099888 retained_intron
ENST00000563819 (DHX38-015) 72108296-72112639 protein_coding
ENST00000564307 (DHX38-010) 72096927-72099826 retained_intron
ENST00000564622 (DHX38-014) 72108297-72108878 retained_intron
ENST00000566329 (DHX38-018) 72101082-72103921 retained_intron
ENST00000566489 (DHX38-008) 72093924-72096867 protein_coding
ENST00000566794 (DHX38-007) 72093613-72096912 protein_coding
ENST00000567142 (DHX38-016) 72108372-72112909 protein_coding
ENST00000567552 (DHX38-011) 72108354-72112650 retained_intron
ENST00000569935 (DHX38-012) 72103101-72104554 retained_intron
ENST00000569952 (DHX38-013) 72108630-72109756 retained_intron
ENST00000579387 (DHX38-002) 72093847-72112903 nonsense_mediated_decay
ENSG00000140830 (TXNL4B)
thioredoxin-like 4B 		ENST00000268483 (TXNL4B-001) 72084853-72093651 protein_coding
ENST00000423037 (TXNL4B-201) 72084859-72093869 protein_coding
ENST00000426362 (TXNL4B-003) 72086397-72094431 protein_coding
ENST00000562153 (TXNL4B-002) 72044289-72093557 protein_coding
ENST00000565171 (TXNL4B-004) 72086715-72093552 nonsense_mediated_decay
ENST00000569767 (TXNL4B-005) 72088987-72093869 protein_coding
ENSG00000221286 (AC092289.1)
 ENST00000408359 (AC092289.1-201) 72579542-72579637 miRNA
ENSG00000259768 (RP5-991G20.1)
 ENST00000563328 (RP5-991G20.1-001) 72665170-72791624 antisense
ENSG00000260664 (AC004158.3)
 ENST00000564508 (AC004158.3-001) 72425948-72430266 lincRNA
ENST00000624327 (AC004158.3-002) 72429353-72533892 lincRNA
ENSG00000261008 (AC004158.2)
 ENST00000561611 (AC004158.2-002) 72425485-72665004 lincRNA
ENST00000563770 (AC004158.2-005) 72479751-72627686 lincRNA
ENST00000563823 (AC004158.2-006) 72523332-72627686 lincRNA
ENST00000570035 (AC004158.2-001) 72522138-72665009 lincRNA
ENST00000570152 (AC004158.2-004) 72570481-72664949 lincRNA
ENST00000624829 (AC004158.2-007) 72283301-72664947 lincRNA
ENSG00000261673 (RP11-328J14.1)
 ENST00000563347 (RP11-328J14.1-001) 72224565-72225144 lincRNA
ENSG00000261701 (HPR)
haptoglobin-related protein 		ENST00000356967 (HPR-201) 72063229-72077245 protein_coding
ENST00000540303 (HPR-001) 72063224-72077246 protein_coding
ENST00000561690 (HPR-002) 72063229-72077246 protein_coding
ENST00000566168 (HPR-003) 72063226-72074751 retained_intron
ENSG00000273581 (AC092289.2)
 ENST00000614764 (AC092289.2-201) 72607780-72607888 miRNA
ENSG00000280264 (AC004158.1)
 ENST00000623725 (AC004158.1-201) 72496967-72497341 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0008FG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs108 VISTA 10090 8:109010589-109613918
GeneTranscriptPositionBiotype
ENSMUSG00000031722 (Hp)
haptoglobin 		ENSMUST00000074898 (Hp-201) 109575130-109579172 protein_coding
ENSMUSG00000031723 (Txnl4b)
thioredoxin-like 4B 		ENSMUST00000034159 (Txnl4b-001) 109565892-109574051 protein_coding
ENSMUST00000178445 (Txnl4b-201) 109568888-109573523 protein_coding
ENSMUSG00000031727 (Pmfbp1)
polyamine modulated factor 1 binding protein 1 		ENSMUST00000034162 (Pmfbp1-201) 109494027-109542642 protein_coding
ENSMUSG00000031730 (Dhodh)
dihydroorotate dehydrogenase 		ENSMUST00000069058 (Dhodh-201) 109593248-109608673 protein_coding
ENSMUST00000123605 (Dhodh-001) 109593477-109608623 protein_coding
ENSMUST00000124138 (Dhodh-010) 109593973-109594950 retained_intron
ENSMUST00000125222 (Dhodh-011) 109593247-109594051 processed_transcript
ENSMUST00000125779 (Dhodh-008) 109594046-109601511 retained_intron
ENSMUST00000128350 (Dhodh-006) 109603303-109608673 protein_coding
ENSMUST00000131107 (Dhodh-003) 109601331-109608420 retained_intron
ENSMUST00000133353 (Dhodh-005) 109591343-109606232 nonsense_mediated_decay
ENSMUST00000142106 (Dhodh-009) 109593901-109596282 retained_intron
ENSMUST00000143900 (Dhodh-002) 109593747-109608623 protein_coding
ENSMUST00000146064 (Dhodh-004) 109601318-109608420 retained_intron
ENSMUST00000150804 (Dhodh-007) 109596030-109608366 nonsense_mediated_decay
ENSMUSG00000037993 (Dhx38)
DEAH (Asp-Glu-Ala-His) box polypeptide 38 		ENSMUST00000042601 (Dhx38-201) 109548017-109565601 protein_coding
ENSMUSG00000097393 (D030068K23Rik)
RIKEN cDNA D030068K23 gene 		ENSMUST00000180382 (D030068K23Rik-201) 109075223-109231047 lincRNA
ENSMUST00000180524 (D030068K23Rik-202) 109075222-109253639 lincRNA
ENSMUST00000181098 (D030068K23Rik-203) 109249866-109273811 lincRNA

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008FG_0001ENSG00000118557ENST00000237353ENST00000355636ENST00000379073ENST00000535461ENST00000536211ENST00000537392ENST00000537465ENST00000537792ENST00000539172ENST00000540440ENST00000543746ENSG00000140829ENST00000268482ENST00000562774ENST00000563650ENST00000563819ENST00000564307ENST00000564622ENST00000566329ENST00000566489ENST00000566794ENST00000567142ENST00000567552ENST00000569935ENST00000569952ENST00000579387ENSG00000140830ENST00000268483ENST00000423037ENST00000426362ENST00000562153ENST00000565171ENST00000569767ENSG00000221286ENST00000408359ENSG00000259768ENST00000563328ENSG00000260664ENST00000564508ENST00000624327ENSG00000261008ENST00000561611ENST00000563770ENST00000563823ENST00000570035ENST00000570152ENST00000624829ENSG00000261673ENST00000563347ENSG00000261701ENST00000356967ENST00000540303ENST00000561690ENST00000566168ENSG00000273581ENST00000614764ENSG00000280264ENST00000623725CIL_0008FG_0002ENSMUSG00000031722ENSMUST00000074898ENSMUSG00000031723ENSMUST00000034159ENSMUST00000178445ENSMUSG00000031727ENSMUST00000034162ENSMUSG00000031730ENSMUST00000069058ENSMUST00000123605ENSMUST00000124138ENSMUST00000125222ENSMUST00000125779ENSMUST00000128350ENSMUST00000131107ENSMUST00000133353ENSMUST00000142106ENSMUST00000143900ENSMUST00000146064ENSMUST00000150804ENSMUSG00000037993ENSMUST00000042601ENSMUSG00000097393ENSMUST00000180382ENSMUST00000180524ENSMUST00000181098
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008FG_0001ENSG00000118557ENST00000237353ENST00000537392ENST00000537792ENSG00000140829ENST00000268482ENST00000563650ENST00000566489ENST00000566794ENST00000567142ENST00000579387ENSG00000140830ENST00000268483ENST00000562153ENSG00000221286ENST00000408359ENSG00000259768ENST00000563328ENSG00000260664ENST00000564508ENST00000624327ENSG00000261008ENST00000561611ENST00000563770ENST00000563823ENST00000570035ENST00000624829ENSG00000261673ENST00000563347ENSG00000261701ENST00000356967ENST00000540303ENST00000561690ENST00000566168ENSG00000273581ENST00000614764ENSG00000280264ENST00000623725CIL_0008FG_0002ENSMUSG00000031722ENSMUST00000074898ENSMUSG00000031723ENSMUST00000034159ENSMUST00000178445ENSMUSG00000031727ENSMUST00000034162ENSMUSG00000031730ENSMUST00000069058ENSMUST00000123605ENSMUST00000125779ENSMUST00000128350ENSMUST00000131107ENSMUST00000133353ENSMUST00000142106ENSMUST00000146064ENSMUSG00000037993ENSMUST00000042601ENSMUSG00000097393ENSMUST00000180382ENSMUST00000180524ENSMUST00000181098
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118557 ENST00000237353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.408±0.00
ENST00000355636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.062±0.00
ENST00000537465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.192±0.00 6.777±0.00 N/A
ENST00000539172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000140829 ENST00000268482 9.038±0.00 N/A 0.809±0.00 12.155±0.00 4.567±2.78 4.446±0.00 2.890±1.38 N/A N/A 4.270±0.00 4.989±0.00 7.569±4.22 N/A 15.941±0.18
ENST00000562774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.185±0.00 N/A N/A N/A
ENST00000563819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566489 N/A N/A 9.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566794 N/A N/A N/A N/A N/A 9.450±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.850±0.00 15.291±0.00 N/A
ENST00000567552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579387 N/A N/A N/A 1.504±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000140830 ENST00000268483 N/A 7.343±0.00 1.262±0.00 4.311±1.97 2.463±0.00 4.145±0.00 2.904±0.00 3.774±0.75 3.015±0.00 2.925±0.00 1.721±0.00 3.330±1.12 2.778±0.71 9.755±0.00
ENST00000423037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562153 N/A N/A N/A N/A N/A N/A N/A 12.934±0.00 N/A N/A N/A N/A N/A N/A
ENST00000565171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221286 ENST00000408359 N/A N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259768 ENST00000563328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.321±0.20 N/A 2.146±0.00
ENSG00000260664 ENST00000564508 0.034±0.00 0.046±0.00 0.073±0.00 1.734±0.09 0.015±0.00 0.212±0.00 0.004±0.00 N/A 0.002±0.00 N/A N/A 0.025±0.00 0.012±0.01 0.029±0.00
ENST00000624327 N/A 0.170±0.00 N/A 0.658±0.00 0.128±0.00 0.111±0.00 0.051±0.00 0.027±0.00 0.007±0.00 0.088±0.00 N/A 0.053±0.05 0.022±0.00 N/A
ENSG00000261008 ENST00000561611 N/A N/A N/A N/A N/A N/A N/A N/A 0.244±0.00 N/A N/A 0.072±0.00 0.027±0.00 N/A
ENST00000563770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00
ENST00000563823 N/A N/A N/A N/A 0.525±0.39 N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A
ENST00000570035 N/A N/A N/A N/A 0.083±0.00 N/A N/A 0.388±0.00 0.013±0.00 N/A N/A N/A 0.053±0.00 N/A
ENST00000570152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624829 0.064±0.00 0.141±0.00 N/A N/A 0.460±0.00 0.470±0.34 0.036±0.00 0.183±0.00 N/A N/A 0.027±0.00 0.057±0.02 0.022±0.01 N/A
ENSG00000261673 ENST00000563347 N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A 0.715±0.00 N/A N/A 0.080±0.00 N/A 0.145±0.00
ENSG00000261701 ENST00000356967 0.043±0.00 0.468±0.00 N/A 2.088±0.00 0.110±0.00 0.197±0.12 12.417±0.00 2.180±0.00 N/A 0.253±0.00 N/A 0.183±0.09 0.078±0.02 0.842±0.00
ENST00000540303 N/A N/A N/A 0.722±0.29 0.115±0.00 N/A 13.349±0.00 26.651±0.00 N/A N/A N/A 0.133±0.05 0.145±0.00 0.418±0.00
ENST00000561690 0.024±0.00 N/A N/A N/A 0.258±0.00 N/A N/A 40.697±0.00 N/A N/A N/A N/A N/A 0.166±0.00
ENST00000566168 N/A N/A N/A N/A 0.241±0.00 N/A N/A N/A N/A 0.229±0.00 N/A N/A 0.063±0.00 0.479±0.00
ENSG00000273581 ENST00000614764 0.608±0.00 N/A N/A N/A N/A 1.020±0.00 0.405±0.00 0.664±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000280264 ENST00000623725 N/A 0.046±0.00 N/A 0.449±0.00 0.140±0.00 0.203±0.12 N/A 0.137±0.00 0.039±0.00 0.040±0.00 0.110±0.07 0.128±0.04 0.161±0.00 0.128±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031722 ENSMUST00000074898 850.564±641.93 76.597±29.66 11.757±3.66 0.165±0.06 262.611±57.60 5.655±2.52 20.942±14.14 15.337±1.17 801.460±555.42 569.502±31.96 7.646±4.44 68.198±14.79 7.388±14.13 3.118±2.02
ENSMUSG00000031723 ENSMUST00000034159 4.809±0.56 2.792±0.69 2.160±0.69 3.109±1.56 3.276±0.68 1.902±0.52 1.978±0.42 3.873±0.44 3.003±1.09 3.084±0.46 3.566±0.66 3.125±0.76 2.619±0.90 18.528±6.86
ENSMUST00000178445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.925±0.00 1.914±0.18 1.817±0.54 N/A
ENSMUSG00000031727 ENSMUST00000034162 0.026±0.01 N/A 0.020±0.00 0.476±0.20 0.030±0.01 0.021±0.00 0.020±0.00 0.017±0.01 0.012±0.02 0.018±0.01 0.011±0.00 0.091±0.04 0.009±0.00 150.902±183.18
ENSMUSG00000031730 ENSMUST00000069058 1.683±0.28 1.950±0.55 1.254±0.31 N/A N/A 1.200±0.25 N/A 1.455±0.11 1.156±0.32 1.667±0.12 1.007±0.00 2.174±0.32 0.723±0.00 0.437±0.00
ENSMUST00000123605 3.313±0.30 2.298±0.85 4.182±0.90 3.075±1.73 3.090±1.41 1.655±0.68 3.644±0.16 3.079±0.73 3.123±1.94 2.119±0.21 5.761±0.76 3.659±0.66 3.640±3.17 0.963±0.22
ENSMUST00000124138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125779 6.499±0.72 6.995±1.95 4.413±1.47 7.763±3.49 8.095±1.69 4.785±1.16 4.788±1.70 4.675±1.39 6.252±2.68 5.983±0.90 N/A 11.894±4.91 6.807±3.74 1.930±0.14
ENSMUST00000128350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.660±0.00 4.108±2.56 1.302±0.00
ENSMUST00000131107 N/A N/A N/A N/A 0.916±0.00 1.367±0.00 N/A N/A N/A 1.222±0.01 N/A N/A N/A 0.485±0.00
ENSMUST00000133353 N/A N/A N/A 0.422±0.00 N/A N/A N/A 0.531±0.00 0.486±0.07 N/A N/A N/A 0.322±0.00 N/A
ENSMUST00000142106 5.179±0.42 4.518±0.87 2.629±0.00 2.527±0.00 5.966±0.56 3.149±0.73 3.425±1.11 4.312±0.89 3.296±0.95 N/A N/A 10.394±3.96 2.900±1.13 1.608±0.29
ENSMUST00000143900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146064 N/A 9.178±2.57 N/A 3.332±0.00 7.205±0.00 3.737±0.51 N/A N/A 2.104±0.00 N/A N/A 8.884±0.81 N/A N/A
ENSMUST00000150804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037993 ENSMUST00000042601 6.583±2.43 6.430±2.76 5.419±0.65 13.993±8.97 4.347±2.56 5.829±3.44 2.291±0.79 4.360±2.09 4.815±2.47 7.233±2.94 3.060±0.49 9.924±9.88 18.538±11.12 14.563±12.93
ENSMUSG00000097393 ENSMUST00000180382 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 0.017±0.00 N/A 0.071±0.03 0.012±0.00 N/A
ENSMUST00000180524 N/A N/A 0.002±0.00 N/A N/A N/A N/A N/A 0.004±0.00 N/A N/A 0.050±0.00 0.024±0.01 0.071±0.03
ENSMUST00000181098 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A 0.102±0.07 N/A N/A

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