C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004Y7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000053946-ENSDARG00000087389 CGP 7955 7:69803230-69896976
GeneTranscriptPositionBiotype
ENSDARG00000053946 (dhx38)
DEAH (Asp-Glu-Ala-His) box polypeptide 38
ENSDART00000076056 (dhx38-001) 69803230-69851337 protein_coding
ENSDART00000128289 (dhx38-201) 69805107-69851331 protein_coding
ENSDARG00000087389 (PMFBP1)
polyamine modulated factor 1 binding protein 1
ENSDART00000127336 (PMFBP1-201) 69871349-69896888 protein_coding
ENSDART00000157211 (PMFBP1-001) 69871235-69896976 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004Y7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140829-ENSG00000118557 CGP 9606 16:72093562-72176878
GeneTranscriptPositionBiotype
ENSG00000118557 (PMFBP1)
polyamine modulated factor 1 binding protein 1
ENST00000237353 (PMFBP1-001) 72119097-72172255 protein_coding
ENST00000355636 (PMFBP1-201) 72119100-72171271 protein_coding
ENST00000379073 (PMFBP1-004) 72119101-72172450 nonsense_mediated_decay
ENST00000535461 (PMFBP1-009) 72150774-72171435 protein_coding
ENST00000536211 (PMFBP1-010) 72154421-72172470 protein_coding
ENST00000537392 (PMFBP1-005) 72124920-72150652 nonsense_mediated_decay
ENST00000537465 (PMFBP1-003) 72119097-72172152 protein_coding
ENST00000537792 (PMFBP1-011) 72112157-72124853 protein_coding
ENST00000539172 (PMFBP1-008) 72154294-72171897 protein_coding
ENST00000540440 (PMFBP1-006) 72164786-72176878 protein_coding
ENST00000543746 (PMFBP1-007) 72154307-72172103 processed_transcript
ENSG00000140829 (DHX38)
DEAH (Asp-Glu-Ala-His) box polypeptide 38
ENST00000268482 (DHX38-001) 72093562-72112912 protein_coding
ENST00000562774 (DHX38-017) 72104486-72112908 protein_coding
ENST00000563650 (DHX38-009) 72097160-72099888 retained_intron
ENST00000563819 (DHX38-015) 72108296-72112639 protein_coding
ENST00000564307 (DHX38-010) 72096927-72099826 retained_intron
ENST00000564622 (DHX38-014) 72108297-72108878 retained_intron
ENST00000566329 (DHX38-018) 72101082-72103921 retained_intron
ENST00000566489 (DHX38-008) 72093924-72096867 protein_coding
ENST00000566794 (DHX38-007) 72093613-72096912 protein_coding
ENST00000567142 (DHX38-016) 72108372-72112909 protein_coding
ENST00000567552 (DHX38-011) 72108354-72112650 retained_intron
ENST00000569935 (DHX38-012) 72103101-72104554 retained_intron
ENST00000569952 (DHX38-013) 72108630-72109756 retained_intron
ENST00000579387 (DHX38-002) 72093847-72112903 nonsense_mediated_decay
ENSG00000140830 (TXNL4B)
thioredoxin-like 4B
ENST00000268483 (TXNL4B-001) 72084853-72093651 protein_coding
ENST00000423037 (TXNL4B-201) 72084859-72093869 protein_coding
ENST00000426362 (TXNL4B-003) 72086397-72094431 protein_coding
ENST00000562153 (TXNL4B-002) 72044289-72093557 protein_coding
ENST00000565171 (TXNL4B-004) 72086715-72093552 nonsense_mediated_decay
ENST00000569767 (TXNL4B-005) 72088987-72093869 protein_coding

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004Y7_0001ENSDARG00000053946ENSDART00000076056ENSDART00000128289ENSDARG00000087389ENSDART00000127336ENSDART00000157211CIL_0004Y7_0002ENSG00000118557ENST00000237353ENST00000355636ENST00000379073ENST00000535461ENST00000536211ENST00000537392ENST00000537465ENST00000537792ENST00000539172ENST00000540440ENST00000543746ENSG00000140829ENST00000268482ENST00000562774ENST00000563650ENST00000563819ENST00000564307ENST00000564622ENST00000566329ENST00000566489ENST00000566794ENST00000567142ENST00000567552ENST00000569935ENST00000569952ENST00000579387ENSG00000140830ENST00000268483ENST00000423037ENST00000426362ENST00000562153ENST00000565171ENST00000569767
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004Y7_0001ENSDARG00000053946ENSDART00000076056ENSDART00000128289ENSDARG00000087389ENSDART00000127336ENSDART00000157211CIL_0004Y7_0002ENSG00000118557ENST00000237353ENST00000537392ENST00000537792ENSG00000140829ENST00000268482ENST00000563650ENST00000566489ENST00000566794ENST00000567142ENST00000579387ENSG00000140830ENST00000268483ENST00000562153
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053946 ENSDART00000076056 N/A N/A N/A 2.705±0.32 N/A N/A 4.556±2.01 3.503±1.69 N/A N/A N/A N/A N/A N/A
ENSDART00000128289 N/A N/A N/A 1.749±0.52 N/A N/A 1.141±0.03 1.143±0.27 1.262±0.00 N/A 1.203±0.00 N/A N/A N/A
ENSDARG00000087389 ENSDART00000127336 N/A N/A N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A 0.880±0.00 N/A N/A N/A
ENSDART00000157211 N/A N/A N/A 0.258±0.00 N/A N/A 0.203±0.12 N/A N/A N/A 0.327±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118557 ENST00000237353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.408±0.00
ENST00000355636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.062±0.00
ENST00000537465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.192±0.00 6.777±0.00 N/A
ENST00000539172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000140829 ENST00000268482 9.038±0.00 N/A 0.809±0.00 12.155±0.00 4.567±2.78 4.446±0.00 2.890±1.38 N/A N/A 4.270±0.00 4.989±0.00 7.569±4.22 N/A 15.941±0.18
ENST00000562774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.185±0.00 N/A N/A N/A
ENST00000563819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566489 N/A N/A 9.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566794 N/A N/A N/A N/A N/A 9.450±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.850±0.00 15.291±0.00 N/A
ENST00000567552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579387 N/A N/A N/A 1.504±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000140830 ENST00000268483 N/A 7.343±0.00 1.262±0.00 4.311±1.97 2.463±0.00 4.145±0.00 2.904±0.00 3.774±0.75 3.015±0.00 2.925±0.00 1.721±0.00 3.330±1.12 2.778±0.71 9.755±0.00
ENST00000423037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562153 N/A N/A N/A N/A N/A N/A N/A 12.934±0.00 N/A N/A N/A N/A N/A N/A
ENST00000565171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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