C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mediator complex subunit 28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118579 MED28 9606 + 4:17614631-17634105 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000237380 MED28-001 17614631-17634105 protein_coding
  ENST00000499786 MED28-004 17630924-17632439 processed_transcript
  ENST00000503945 MED28-002 17614664-17628170 nonsense_mediated_decay
  ENST00000506409 MED28-003 17614648-17620081 retained_intron
  ENST00000612711 MED28-201 17614652-17624018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000237380ENST00000503945ENST00000612711
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000237380 N/A N/A N/A 1.206±0.00 N/A N/A N/A 2.723±0.00 N/A 4.065±0.34 4.959±0.00 5.845±0.00
ENST00000503945 N/A N/A N/A N/A N/A N/A N/A N/A 6.625±0.00 N/A N/A N/A
ENST00000612711 12.340±0.00 15.363±0.00 9.650±0.00 8.649±4.40 6.707±0.00 13.455±0.00 6.460±0.00 35.099±0.00 9.261±0.00 37.014±18.06 40.151±22.47 39.670±22.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X6 CIL_0005X6_0001 CGP 4:17577192-17634105
CIL_0005X3 CIL_0005X3_0001 CGP 4:17614631-17781512

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016020 IEA membrane
GO:0016592 IEA mediator complex
GO:0019827 IEA stem cell maintenance
GO:0030864 IEA cortical actin cytoskeleton
GO:0051151 IEA negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037410 med28 mediator complex subunit 28 protein_coding Danio_rerio
ENSMUSG00000015804 Med28 mediator complex subunit 28 protein_coding Mus_musculus

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