C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mediator complex subunit 28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015804 Med28 10090 + 5:45520221-45529276 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015948 Med28-004 45521007-45525495 processed_transcript
  ENSMUST00000118833 Med28-003 45520317-45525599 protein_coding
  ENSMUST00000119579 Med28-002 45520307-45525598 protein_coding
  ENSMUST00000139586 Med28-005 45522139-45525178 processed_transcript
  ENSMUST00000156481 Med28-001 45520221-45529276 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015948ENSMUST00000118833ENSMUST00000119579ENSMUST00000156481
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015948 32.596±1.26 N/A 33.100±5.19 44.930±14.82 30.205±11.43 40.374±10.69 14.431±3.40 59.660±6.46 16.036±9.75 33.373±2.57 13.255±0.90 49.774±16.60 37.242±22.21 92.506±19.33
ENSMUST00000118833 24.468±5.52 115.495±3.22 25.005±4.47 31.397±6.71 33.804±3.24 34.109±14.46 15.886±1.91 54.872±4.23 17.838±4.25 40.050±7.50 16.025±2.04 37.667±13.81 27.007±14.65 78.420±30.31
ENSMUST00000119579 N/A N/A N/A N/A 16.342±0.00 N/A N/A N/A N/A N/A N/A N/A 17.787±5.38 N/A
ENSMUST00000156481 1.357±0.44 N/A 1.768±0.20 2.573±0.75 1.433±0.33 2.786±0.00 0.567±0.10 2.230±0.42 1.070±0.51 1.997±0.07 0.930±0.15 3.744±1.73 1.279±0.61 3.260±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X6 CIL_0005X6_0002 CGP 5:45493374-45529276
CIL_0005X3 CIL_0005X3_0002 CGP 5:45520221-45639501

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005856 IDA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016020 IEA membrane
GO:0016592 IDA mediator complex
GO:0019827 IMP stem cell maintenance
GO:0030864 IDA cortical actin cytoskeleton
GO:0051151 IMP negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037410 med28 mediator complex subunit 28 protein_coding Danio_rerio
ENSG00000118579 MED28 mediator complex subunit 28 protein_coding Homo_sapiens

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