C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000237380 MED28-001 ENSG00000118579 9606 + 4:17614631-17634105 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungOvaryPlacentaTestisENST00000237380
Transcript ID Colon Lung Ovary Placenta Testis
ENST00000237380 1.206±0.00 2.723±0.00 4.065±0.34 4.959±0.00 5.845±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X6 CIL_0005X6_0001 CGP 4:17577192-17634105
CIL_0005X3 CIL_0005X3_0001 CGP 4:17614631-17781512

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016020 IEA membrane
GO:0016592 IEA mediator complex
GO:0019827 IEA stem cell maintenance
GO:0030864 IEA cortical actin cytoskeleton
GO:0051151 IEA negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156481 Med28-001 protein_coding Mus_musculus 0 647
ENSMUST00000015948 Med28-004 processed_transcript Mus_musculus 0 521
ENSMUST00000119579 Med28-002 protein_coding Mus_musculus 0 257
ENSMUST00000118833 Med28-003 protein_coding Mus_musculus 0 254

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