C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRA stem-loop interacting RNA binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119705 SLIRP 9606 + 14:77708071-77761104 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000238688 SLIRP-002 77708079-77717598 protein_coding
  ENST00000553981 SLIRP-010 77708178-77717598 protein_coding
  ENST00000554074 SLIRP-007 77708121-77712038 retained_intron
  ENST00000555890 SLIRP-005 77708114-77717593 nonsense_mediated_decay
  ENST00000556310 SLIRP-009 77708160-77760952 nonsense_mediated_decay
  ENST00000556375 SLIRP-008 77708160-77760952 protein_coding
  ENST00000556831 SLIRP-006 77708119-77716351 protein_coding
  ENST00000556956 SLIRP-011 77710644-77717584 retained_intron
  ENST00000557342 SLIRP-001 77708071-77717598 protein_coding
  ENST00000557431 SLIRP-004 77708103-77761104 protein_coding
  ENST00000557623 SLIRP-003 77708103-77721107 protein_coding
  ENST00000613856 SLIRP-201 77708071-77717594 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000238688ENST00000553981ENST00000557342
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000238688 N/A N/A N/A N/A 30.179±0.00 N/A 18.838±0.00 N/A N/A N/A
ENST00000553981 N/A N/A N/A N/A N/A N/A N/A 42.890±0.00 N/A N/A
ENST00000557342 44.412±0.00 59.263±15.99 28.994±2.79 45.247±3.87 39.222±3.56 47.805±11.55 33.143±0.20 35.404±1.77 52.664±12.65 64.136±9.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TV CIL_0004TV_0001 CGP 14:77672404-77761104
CIL_0004U2 CIL_0004U2_0001 CGP 14:77708071-77761207

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000961 IEA negative regulation of mitochondrial RNA catabolic process
GO:0001669 IEA acrosomal vesicle
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IEA spermatid development
GO:0007338 IEA single fertilization
GO:0030317 IEA sperm motility
GO:0030529 IEA ribonucleoprotein complex
GO:0036126 IEA sperm flagellum
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:0070584 IEA mitochondrion morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000097753 SLIRP SRA stem-loop interacting RNA binding protein protein_coding Danio_rerio
ENSMUSG00000021040 Slirp SRA stem-loop interacting RNA binding protein protein_coding Mus_musculus

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