C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004TV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100601-ENSG00000119705 CGP 9606 14:77672404-77761104
GeneTranscriptPositionBiotype
ENSG00000100601 (ALKBH1)
alkB, alkylation repair homolog 1 (E. coli) 		ENST00000216489 (ALKBH1-001) 77672404-77708020 protein_coding
ENST00000554097 (ALKBH1-004) 77691733-77704452 processed_transcript
ENST00000555100 (ALKBH1-003) 77674103-77707992 nonsense_mediated_decay
ENST00000557057 (ALKBH1-002) 77673075-77708010 nonsense_mediated_decay
ENSG00000100603 (SNW1)
SNW domain containing 1 		ENST00000261531 (SNW1-001) 77717599-77761190 protein_coding
ENST00000553565 (SNW1-008) 77730856-77737007 retained_intron
ENST00000554324 (SNW1-007) 77732539-77761156 protein_coding
ENST00000554775 (SNW1-004) 77717628-77761155 protein_coding
ENST00000555761 (SNW1-003) 77717953-77761156 protein_coding
ENST00000556428 (SNW1-002) 77717791-77761207 nonsense_mediated_decay
ENST00000557663 (SNW1-006) 77738738-77761156 retained_intron
ENSG00000119705 (SLIRP)
SRA stem-loop interacting RNA binding protein 		ENST00000238688 (SLIRP-002) 77708079-77717598 protein_coding
ENST00000553981 (SLIRP-010) 77708178-77717598 protein_coding
ENST00000554074 (SLIRP-007) 77708121-77712038 retained_intron
ENST00000555890 (SLIRP-005) 77708114-77717593 nonsense_mediated_decay
ENST00000556310 (SLIRP-009) 77708160-77760952 nonsense_mediated_decay
ENST00000556375 (SLIRP-008) 77708160-77760952 protein_coding
ENST00000556831 (SLIRP-006) 77708119-77716351 protein_coding
ENST00000556956 (SLIRP-011) 77710644-77717584 retained_intron
ENST00000557342 (SLIRP-001) 77708071-77717598 protein_coding
ENST00000557431 (SLIRP-004) 77708103-77761104 protein_coding
ENST00000557623 (SLIRP-003) 77708103-77721107 protein_coding
ENST00000613856 (SLIRP-201) 77708071-77717594 protein_coding
ENSG00000239272 (RPL21P10)
ribosomal protein L21 pseudogene 10 		ENST00000463521 (RPL21P10-001) 77683202-77683989 processed_pseudogene
ENSG00000258917 (ZMYND19P1)
zinc finger, MYND-type containing 19 pseudogene 1 		ENST00000554267 (ZMYND19P1-001) 77696591-77697377 processed_pseudogene
CIL_0004TV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000079036-ENSMUSG00000021040 CGP 10090 12:87425840-87452206
GeneTranscriptPositionBiotype
ENSMUSG00000021039 (Snw1)
SNW domain containing 1 		ENSMUST00000021428 (Snw1-201) 87449936-87472299 protein_coding
ENSMUSG00000021040 (Slirp)
SRA stem-loop interacting RNA binding protein 		ENSMUST00000077462 (Slirp-005) 87443936-87449904 protein_coding
ENSMUST00000160488 (Slirp-003) 87443912-87449920 protein_coding
ENSMUST00000160880 (Slirp-004) 87443946-87449924 protein_coding
ENSMUST00000161023 (Slirp-001) 87443896-87452206 protein_coding
ENSMUSG00000064938 (Mir3068)
microRNA 3068 		ENSMUST00000083004 (Mir3068-201) 87437682-87437817 snoRNA
ENSMUSG00000100306 (RP23-285E19.4)
predicted gene 29362 		ENSMUST00000187898 (RP23-285E19.4-001) 87437684-87437816 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TV_0001ENSG00000100601ENST00000216489ENST00000554097ENST00000555100ENST00000557057ENSG00000100603ENST00000261531ENST00000553565ENST00000554324ENST00000554775ENST00000555761ENST00000556428ENST00000557663ENSG00000119705ENST00000238688ENST00000553981ENST00000554074ENST00000555890ENST00000556310ENST00000556375ENST00000556831ENST00000556956ENST00000557342ENST00000557431ENST00000557623ENST00000613856ENSG00000239272ENST00000463521ENSG00000258917ENST00000554267CIL_0004TV_0002ENSMUSG00000021039ENSMUST00000021428ENSMUSG00000021040ENSMUST00000077462ENSMUST00000160488ENSMUST00000160880ENSMUST00000161023ENSMUSG00000064938ENSMUST00000083004ENSMUSG00000100306ENSMUST00000187898
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TV_0001ENSG00000100601ENST00000216489ENST00000554097ENST00000555100ENST00000557057ENSG00000100603ENST00000261531ENST00000553565ENST00000554775ENST00000556428ENSG00000119705ENST00000238688ENST00000553981ENST00000557342ENSG00000239272ENST00000463521ENSG00000258917ENST00000554267CIL_0004TV_0002ENSMUSG00000021039ENSMUST00000021428ENSMUSG00000021040ENSMUST00000077462ENSMUST00000160488ENSMUSG00000064938ENSMUST00000083004ENSMUSG00000100306ENSMUST00000187898
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100601 ENST00000216489 0.435±0.00 0.410±0.00 0.375±0.00 0.783±0.35 0.716±0.00 1.216±0.01 0.556±0.09 0.890±0.05 0.470±0.27 1.112±0.36 0.534±0.00 1.066±0.23 1.579±0.43 2.081±0.75
ENST00000554097 N/A N/A 0.976±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.187±0.00 2.202±0.00
ENST00000555100 N/A N/A N/A N/A N/A 1.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557057 2.349±0.00 3.121±0.00 0.408±0.00 0.983±0.76 1.283±0.01 2.683±0.00 3.023±0.00 2.960±0.00 1.128±0.61 2.901±0.00 1.645±0.45 1.640±1.10 3.078±1.45 3.329±1.88
ENSG00000100603 ENST00000261531 14.970±0.00 9.007±0.00 1.301±0.00 5.311±2.15 4.378±1.42 7.068±0.00 5.635±2.46 3.973±0.00 5.237±0.51 9.023±7.28 9.210±5.96 11.574±4.50 15.216±2.83 25.029±0.00
ENST00000553565 N/A N/A N/A N/A N/A N/A N/A 7.209±0.00 N/A N/A N/A N/A N/A N/A
ENST00000554324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554775 21.195±0.00 19.022±0.00 4.432±0.00 9.507±3.79 9.688±5.22 9.677±3.34 N/A 6.260±3.97 3.951±0.75 6.930±2.57 4.859±2.74 17.005±4.54 12.629±5.24 42.167±2.76
ENST00000555761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556428 N/A N/A N/A 5.960±0.00 3.234±0.85 6.146±0.00 3.841±0.00 8.071±0.00 N/A 5.027±1.29 N/A N/A 11.115±0.00 22.002±0.00
ENST00000557663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000119705 ENST00000238688 N/A N/A N/A N/A N/A N/A 30.179±0.00 N/A 18.838±0.00 N/A N/A N/A N/A N/A
ENST00000553981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.890±0.00 N/A N/A N/A
ENST00000554074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557342 N/A 44.412±0.00 N/A 59.263±15.99 28.994±2.79 45.247±3.87 39.222±3.56 47.805±11.55 33.143±0.20 N/A 35.404±1.77 52.664±12.65 64.136±9.92 N/A
ENST00000557431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239272 ENST00000463521 0.081±0.00 1.191±0.00 N/A 0.453±0.00 0.271±0.05 0.203±0.00 N/A 0.218±0.09 0.025±0.00 0.053±0.00 N/A 0.464±0.32 0.154±0.00 0.717±0.19
ENSG00000258917 ENST00000554267 N/A N/A N/A N/A 0.037±0.02 N/A 0.110±0.00 0.100±0.00 0.066±0.00 N/A N/A 0.070±0.00 N/A 0.031±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021039 ENSMUST00000021428 11.282±1.56 4.719±0.78 31.703±0.79 33.242±14.35 9.989±2.07 6.972±1.30 8.023±0.32 11.046±0.86 14.141±10.49 9.637±0.35 21.587±2.18 22.641±26.65 44.563±22.95 25.828±24.09
ENSMUSG00000021040 ENSMUST00000077462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.383±0.00 N/A N/A N/A
ENSMUST00000160488 17.451±0.40 8.935±1.29 52.183±9.06 30.231±0.00 18.160±4.52 10.035±1.46 20.903±1.71 25.671±2.62 27.157±18.93 11.384±0.73 23.558±3.78 13.182±1.99 42.686±0.00 29.039±2.26
ENSMUST00000160880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064938 ENSMUST00000083004 N/A N/A N/A N/A N/A N/A N/A N/A 141.012±121.49 649.681±55.53 4.506±0.00 N/A 5.355±0.00 N/A
ENSMUSG00000100306 ENSMUST00000187898 N/A N/A 9.811±1.51 21.780±10.04 N/A N/A N/A N/A 17.145±9.07 N/A N/A 1341.324±943.31 8.236±5.78 6.908±0.00

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